This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3zxw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:13, 1 May 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3zxw' size='340' side='right'caption='[[3zxw]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='3zxw' size='340' side='right'caption='[[3zxw]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3zxw]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Theeb Theeb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZXW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZXW FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3zxw]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus_BP-1 Thermosynechococcus vestitus BP-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZXW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZXW FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CAP:2-CARBOXYARABINITOL-1,5-DIPHOSPHATE'>CAP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CAP:2-CARBOXYARABINITOL-1,5-DIPHOSPHATE'>CAP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2ybv|2ybv]]</div></td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Ribulose-bisphosphate_carboxylase Ribulose-bisphosphate carboxylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.39 4.1.1.39] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zxw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zxw OCA], [https://pdbe.org/3zxw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zxw RCSB], [https://www.ebi.ac.uk/pdbsum/3zxw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zxw ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zxw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zxw OCA], [https://pdbe.org/3zxw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zxw RCSB], [https://www.ebi.ac.uk/pdbsum/3zxw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zxw ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/RBL_THEEB RBL_THEEB]] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site (By similarity).
+
[https://www.uniprot.org/uniprot/RBL_THEVB RBL_THEVB] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.[HAMAP-Rule:MF_01338]
==See Also==
==See Also==
Line 18: Line 16:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Ribulose-bisphosphate carboxylase]]
+
[[Category: Thermosynechococcus vestitus BP-1]]
-
[[Category: Theeb]]
+
[[Category: Bialek W]]
-
[[Category: Bialek, W]]
+
[[Category: Gubernator B]]
-
[[Category: Gubernator, B]]
+
[[Category: Hofmann E]]
-
[[Category: Hofmann, E]]
+
[[Category: Szczepaniak A]]
-
[[Category: Szczepaniak, A]]
+
[[Category: Terlecka B]]
-
[[Category: Terlecka, B]]
+
[[Category: Wilhelmi V]]
-
[[Category: Wilhelmi, V]]
+
-
[[Category: Calvin cycle]]
+
-
[[Category: Carbon dioxide fixation]]
+
-
[[Category: Chloroplast]]
+
-
[[Category: Co2/o2 specificity]]
+
-
[[Category: Hydroxylation]]
+
-
[[Category: Lyase]]
+
-
[[Category: Monooxygenase]]
+
-
[[Category: Photorespiration]]
+
-
[[Category: Photosynthesis]]
+
-
[[Category: Thermophilic cyanobacteria]]
+
-
[[Category: Thermostability]]
+

Current revision

STRUCTURE OF ACTIVATED RUBISCO FROM THERMOSYNECHOCOCCUS ELONGATUS COMPLEXED WITH 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE

PDB ID 3zxw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools