401d

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Current revision (10:35, 1 March 2024) (edit) (undo)
 
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== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[401d]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=401D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=401D FirstGlance]. <br>
<table><tr><td colspan='2'>[[401d]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=401D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=401D FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=401d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=401d OCA], [https://pdbe.org/401d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=401d RCSB], [https://www.ebi.ac.uk/pdbsum/401d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=401d ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=401d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=401d OCA], [https://pdbe.org/401d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=401d RCSB], [https://www.ebi.ac.uk/pdbsum/401d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=401d ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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The X-ray crystal structure of the DNA decamer d(GACCGCGGTC), containing half the human papilloma virus E2 binding site, has been solved from two crystals grown at different ionic conditions (50 mM MgCl2and 50 mM spermine or 1.56 mM MgCl2and 1.56 mM spermine). Despite the variation in salt concentration, the two DNA structures are in a very similar, A-type DNA conformation, with helical axes curving towards the major groove. Although the salt concentrations do not effect the helical parameters or hydration to a large degree, there is a change in the overall helical curvature; 18 degrees and 31 degrees for the low and high salt structures, respectively. This curvature appears to be sequence specific and biologically relevant when compared with similar DNA structures, including the E2 binding site of a protein-DNA complex.
 
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X-ray crystal structures of half the human papilloma virus E2 binding site: d(GACCGCGGTC).,Finley JB, Luo M Nucleic Acids Res. 1998 Dec 15;26(24):5719-27. PMID:9838004<ref>PMID:9838004</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 401d" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Finley, J B]]
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[[Category: Finley JB]]
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[[Category: Luo, M]]
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[[Category: Luo M]]
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[[Category: Dna]]
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[[Category: Dna double helix]]
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Current revision

STRUCTURE OF A DNA IN LOW SALT CONDITIONS D(GACCGCGGTC)

PDB ID 401d

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