This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


7p2u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:00, 1 February 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='7p2u' size='340' side='right'caption='[[7p2u]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='7p2u' size='340' side='right'caption='[[7p2u]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7p2u]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7P2U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7P2U FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7p2u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Schistosoma_mansoni Schistosoma mansoni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7P2U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7P2U FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4WB:5-[[(2R)-2-(3-chlorophenyl)-1-methyl-spiro[2H-indole-3,4-piperidine]-1-yl]methyl]-N-oxidanyl-thiophene-2-carboxamide'>4WB</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4WB:5-[[(2R)-2-(3-chlorophenyl)-1-methyl-spiro[2H-indole-3,4-piperidine]-1-yl]methyl]-N-oxidanyl-thiophene-2-carboxamide'>4WB</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7p2u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7p2u OCA], [https://pdbe.org/7p2u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7p2u RCSB], [https://www.ebi.ac.uk/pdbsum/7p2u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7p2u ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7p2u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7p2u OCA], [https://pdbe.org/7p2u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7p2u RCSB], [https://www.ebi.ac.uk/pdbsum/7p2u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7p2u ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A5H660_SCHMA A5H660_SCHMA]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 16: Line 19:
</div>
</div>
<div class="pdbe-citations 7p2u" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 7p2u" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Histone deacetylase 3D structures|Histone deacetylase 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 21: Line 27:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Campiani, G]]
+
[[Category: Schistosoma mansoni]]
-
[[Category: Gemma, S]]
+
[[Category: Campiani G]]
-
[[Category: Ruberti, G]]
+
[[Category: Gemma S]]
-
[[Category: Saccoccia, F]]
+
[[Category: Ruberti G]]
-
[[Category: Hdaci]]
+
[[Category: Saccoccia F]]
-
[[Category: Histone-deacetilase inhibitor complex]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Novel binding-site]]
+
-
[[Category: Smhdac8]]
+

Current revision

Crystal structure of Schistosoma mansoni HDAC8 in complex with a 3-chlorophenyl-spiroindoline capped hydroxamate-based inhibitor, bound to a novel site

PDB ID 7p2u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools