8ena
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 8ena is ON HOLD until Paper Publication Authors: Karasawa, A., Andi, B., Ruchs, M.R., Shi, W., McSweeney, S., Hendrickson, W.A., Liu, Q. Descriptio...) |
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- | '''Unreleased structure''' | ||
- | + | ==Thaumatin native-SAD structure determined at 5 keV with a helium environmet== | |
+ | <StructureSection load='8ena' size='340' side='right'caption='[[8ena]], [[Resolution|resolution]] 2.50Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[8ena]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8ENA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8ENA FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8ena FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8ena OCA], [https://pdbe.org/8ena PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8ena RCSB], [https://www.ebi.ac.uk/pdbsum/8ena PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8ena ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/THM1_THADA THM1_THADA] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | De novo structure determination from single-wavelength anomalous diffraction using native sulfur or phospho-rus in biomolecules (native-SAD) is an appealing method to mitigate the labor-intensive production of heavy-atom derivatives and seleno-methio-nyl substitutions. The native-SAD method is particularly attractive for membrane proteins, which are difficult to produce and often recalcitrant to grow into decent-sized crystals. Native-SAD uses lower-energy X-rays to enhance anomalous signals from sulfur or phospho-rus. However, at lower energies, the scattering and absorption of air contribute to the background noise, reduce the signals and are thus adverse to native-SAD phasing. We have previously demonstrated native-SAD phasing at an energy of 5 keV in air at the NSLS-II FMX beamline. Here, the use of a helium path developed to reduce both the noise from background scattering and the air absorption of the diffracted X-ray beam are described. The helium path was used for collection of anomalous diffraction data at 5 keV for two proteins: thaumatin and the membrane protein TehA. Although anomalous signals from each individual crystal are very weak, robust anomalous signals are obtained from data assembled from micrometre-sized crystals. The thaumatin structure was determined from 15 microcrystals and the TehA structure from 18 microcrystals. These results demonstrate the usefulness of a helium environment in support of native-SAD phasing at 5 keV. | ||
- | + | Multi-crystal native-SAD phasing at 5 keV with a helium environment.,Karasawa A, Andi B, Fuchs MR, Shi W, McSweeney S, Hendrickson WA, Liu Q IUCrJ. 2022 Oct 21;9(Pt 6):768-777. doi: 10.1107/S205225252200971X. eCollection , 2022 Nov 1. PMID:36381147<ref>PMID:36381147</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 8ena" style="background-color:#fffaf0;"></div> |
- | [[Category: Andi | + | == References == |
- | [[Category: | + | <references/> |
- | [[Category: Karasawa | + | __TOC__ |
- | [[Category: | + | </StructureSection> |
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: | + | [[Category: Thaumatococcus daniellii]] |
+ | [[Category: Andi B]] | ||
+ | [[Category: Hendrickson WA]] | ||
+ | [[Category: Karasawa A]] | ||
+ | [[Category: Liu Q]] | ||
+ | [[Category: McSweeney S]] | ||
+ | [[Category: Ruchs MR]] | ||
+ | [[Category: Shi W]] |
Current revision
Thaumatin native-SAD structure determined at 5 keV with a helium environmet
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