8hkb
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 8hkb is ON HOLD Authors: Lee, S.H., Seo, H., Kim, K.-J. Description: TPA bound-form of Periplasmic terephthalate binding protein (TBP) from Ideonel...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==TPA bound-form of Periplasmic terephthalate binding protein (TBP) from Ideonella sakaiensis mutant K184D== | |
| + | <StructureSection load='8hkb' size='340' side='right'caption='[[8hkb]], [[Resolution|resolution]] 1.40Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[8hkb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ideonella_sakaiensis Ideonella sakaiensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8HKB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8HKB FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UB7:terephthalic+acid'>UB7</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8hkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8hkb OCA], [https://pdbe.org/8hkb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8hkb RCSB], [https://www.ebi.ac.uk/pdbsum/8hkb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8hkb ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A0A0K8P8D2_IDESA A0A0K8P8D2_IDESA] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Ideonella sakaiensis is the bacterium that can survive by degrading polyethylene terephthalate (PET) plastic, and terephthalic acid (TPA) binding protein (IsTBP) is an essential periplasmic protein for uptake of TPA into the cytosol for complete degradation of PET. Here, we demonstrated that IsTBP has remarkably high specificity for TPA among 33 monophenolic compounds and two 1,6-dicarboxylic acids tested. Structural comparisons with 6-carboxylic acid binding protein (RpAdpC) and TBP from Comamonas sp. E6 (CsTphC) revealed the key structural features that contribute to high TPA specificity and affinity of IsTBP. We also elucidated the molecular mechanism underlying the conformational change upon TPA binding. In addition, we developed the IsTBP variant with enhanced TPA sensitivity, which can be expanded for the use of TBP as a biosensor for PET degradation. | ||
| - | + | Molecular mechanism underlying high-affinity terephthalate binding and conformational change of TBP from Ideonella sakaiensis.,Lee SH, Seo H, Hong H, Kim M, Kim KJ Int J Biol Macromol. 2023 Jul 15;243:125252. doi: 10.1016/j.ijbiomac.2023.125252. , Epub 2023 Jun 7. PMID:37295700<ref>PMID:37295700</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: Kim | + | <div class="pdbe-citations 8hkb" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | == References == |
| - | [[Category: | + | <references/> |
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Ideonella sakaiensis]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Kim K-J]] | ||
| + | [[Category: Lee SH]] | ||
| + | [[Category: Seo H]] | ||
Current revision
TPA bound-form of Periplasmic terephthalate binding protein (TBP) from Ideonella sakaiensis mutant K184D
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