This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1jgk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:52, 3 April 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1jgk.gif|left|200px]]
 
-
<!--
+
==SOLUTION STRUCTURE OF CANDOXIN==
-
The line below this paragraph, containing "STRUCTURE_1jgk", creates the "Structure Box" on the page.
+
<StructureSection load='1jgk' size='340' side='right'caption='[[1jgk]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1jgk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bungarus_candidus Bungarus candidus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JGK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JGK FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jgk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jgk OCA], [https://pdbe.org/1jgk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jgk RCSB], [https://www.ebi.ac.uk/pdbsum/1jgk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jgk ProSAT]</span></td></tr>
-
{{STRUCTURE_1jgk| PDB=1jgk | SCENE= }}
+
</table>
-
 
+
== Function ==
-
'''SOLUTION STRUCTURE OF CANDOXIN'''
+
[https://www.uniprot.org/uniprot/3NO4_BUNCA 3NO4_BUNCA] Binds and inhibits muscular and neuronal nicotinic acetylcholine receptors (nAChR). Is a reversible antagonist of muscle nAChR (alpha-1-beta-1-delta-epsilon/CHRNA1-CHRNB1-CHRND-CHRNE) (IC(50)=10 nM) and a potent and poorly reversible antagonist of the neuronal alpha-7/CHRNA7 nAChR (IC(50)=50 nM). May exhibit differential affinities for the two binding sites on the muscle nAChR.<ref>PMID:11884390</ref>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
1JGK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bungarus_candidus Bungarus candidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JGK OCA].
+
<jmolCheckbox>
-
[[Category: Bungarus candidus]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jg/1jgk_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Chary, K V.R.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Govil, G.]]
+
</jmolCheckbox>
-
[[Category: Kini, M R.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jgk ConSurf].
-
[[Category: Venkitakrishnan, R P.]]
+
<div style="clear:both"></div>
-
[[Category: Beta sheet]]
+
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Bungarus candidus]]
[[Category: Bungarus candidus]]
-
[[Category: Snake venom protein]]
+
[[Category: Large Structures]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 21:11:47 2008''
+
[[Category: Chary KVR]]
 +
[[Category: Govil G]]
 +
[[Category: Kini MR]]
 +
[[Category: Venkitakrishnan RP]]

Current revision

SOLUTION STRUCTURE OF CANDOXIN

PDB ID 1jgk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools