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DNA polymerase 3D structures

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Current revision (07:48, 16 February 2023) (edit) (undo)
 
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*DNA polymerase I
*DNA polymerase I
-
**[[1taq]] – TaDpo I - Thermus aquaticus<br />
+
**[[1taq]] – TaDpo I - ''Thermus aquaticus''<br />
**[[1jxe]] – TaDpo I Stoffel fragment 290-832<br />
**[[1jxe]] – TaDpo I Stoffel fragment 290-832<br />
**[[5ktq]] – TaDpo I Stoffel fragment + nucleotide<br />
**[[5ktq]] – TaDpo I Stoffel fragment + nucleotide<br />
Line 13: Line 13:
**[[5oxj]] – TaDpo I + DNA + GMP derivative + imidazole derivative<br />
**[[5oxj]] – TaDpo I + DNA + GMP derivative + imidazole derivative<br />
**[[3ojs]], [[3oju]], [[1tau]], [[4dle]], [[4dlg]], [[4elt]], [[4elu]], [[4elv]] - TaDpo I + DNA<br />
**[[3ojs]], [[3oju]], [[1tau]], [[4dle]], [[4dlg]], [[4elt]], [[4elu]], [[4elv]] - TaDpo I + DNA<br />
-
**[[4flt]], [[4flu]], [[4flv]], [[4flw]], [[4flx]], [[4fly]], [[4flz]], [[4fm0]], [[4fm1]], [[4fm2]] – PaDpo I + DNA – Pyrococcus abyssi<br />
+
**[[4flt]], [[4flu]], [[4flv]], [[4flw]], [[4flx]], [[4fly]], [[4flz]], [[4fm0]], [[4fm1]], [[4fm2]] – PaDpo I + DNA – ''Pyrococcus abyssi''<br />
-
**[[1s5j]] – SsDpo I - Sulfolobus solfataricus<br />
+
**[[1s5j]] – SsDpo I - ''Sulfolobus solfataricus''<br />
-
**[[6dsy]], [[6dsx]], [[6dsw]], [[6dsv]], [[6dsu]], [[7k5o]], [[7k5p]], [[7k5r]], [[7k5q]], [[7k5s]], [[7k5t]], [[7k5u]] - GsDpo I + DNA - Geobacillus stearothermophilus<br />
+
**[[6dsy]], [[6dsx]], [[6dsw]], [[6dsv]], [[6dsu]], [[7k5o]], [[7k5p]], [[7k5r]], [[7k5q]], [[7k5s]], [[7k5t]], [[7k5u]] - GsDpo I + DNA - ''Geobacillus stearothermophilus''<br />
**[[3eyz]], [[6p5c]] - GsDpo I (mutant) + DNA <br />
**[[3eyz]], [[6p5c]] - GsDpo I (mutant) + DNA <br />
**[[6mu5]], [[6mu4]], [[6ur2]], [[6ur4]] - GsDpo I + DNA + nucleotide derivative <br />
**[[6mu5]], [[6mu4]], [[6ur2]], [[6ur4]] - GsDpo I + DNA + nucleotide derivative <br />
**[[3ez5]], [[6ueu]], [[6ur9]], [[6us5]] - GsDpo I (mutant) + DNA + nucleotide <br />
**[[3ez5]], [[6ueu]], [[6ur9]], [[6us5]] - GsDpo I (mutant) + DNA + nucleotide <br />
-
**[[3pv8]], [[3px0]], [[3px4]], [[3px6]], [[4dqi]], [[4dqp]], [[4dqq]], [[4dqr]], [[4dqs]], [[4ds4]], [[4ds5]], [[4dse]], [[4dsf]], [[4e0d]], [[4ez6]], [[4ez9]], [[4f2r]], [[4f2s]], [[4f3o]], [[4f4k]], [[4f8r]] - GkDpo I (mutant) + DNA – Geobacillus kaustophilus<br />
+
**[[3pv8]], [[3px0]], [[3px4]], [[3px6]], [[4dqi]], [[4dqp]], [[4dqq]], [[4dqr]], [[4dqs]], [[4ds4]], [[4ds5]], [[4dse]], [[4dsf]], [[4e0d]], [[4ez6]], [[4ez9]], [[4f2r]], [[4f2s]], [[4f3o]], [[4f4k]], [[4f8r]] - GkDpo I (mutant) + DNA – ''Geobacillus kaustophilus''<br />
-
**[[6vdc]], [[6vde]] – MsPol I – Mycobacterium smegmatis<br />
+
**[[6vdc]], [[6vde]] – MsPol I – ''Mycobacterium smegmatis''<br />
**[[6vdd]] - MsDpo I + DNA + nucleotide derivative <br />
**[[6vdd]] - MsDpo I + DNA + nucleotide derivative <br />
**[[7pbk]] – Dpo I – Vibrio phage<br />
**[[7pbk]] – Dpo I – Vibrio phage<br />
Line 27: Line 27:
*DNA polymerase I klenow fragment or Taq polymerase
*DNA polymerase I klenow fragment or Taq polymerase
-
**[[2kzz]], [[1d8y]], [[2kzm]] – EcDpo I - Escherichia coli<br />
+
**[[2kzz]], [[1d8y]], [[2kzm]] – EcDpo I - ''Escherichia coli''<br />
**[[1qsl]] - EcDpo I + DNA<br />
**[[1qsl]] - EcDpo I + DNA<br />
**[[1kfs]], [[1krp]], [[1ksp]], [[1kln]] - EcDpo I (mutant) + DNA<br />
**[[1kfs]], [[1krp]], [[1ksp]], [[1kln]] - EcDpo I (mutant) + DNA<br />
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**[[3k5n]] - EcDpo II (mutant) + DNA<br />
**[[3k5n]] - EcDpo II (mutant) + DNA<br />
**[[3k5o]], [[1q8i]] - EcDpo II (mutant) <br />
**[[3k5o]], [[1q8i]] - EcDpo II (mutant) <br />
-
**[[3o59]], [[5bkh]] - PhDpo II large subunit - Pyrococcus horikoshii<br />
+
**[[3o59]], [[5bkh]] - PhDpo II large subunit - ''Pyrococcus horikoshii<''br />
**[[2kxe]] - PhDpo II small subunit<br />
**[[2kxe]] - PhDpo II small subunit<br />
-
**[[1qqc]] – DeDpo II – Desulfurococcus<br />
+
**[[1qqc]] – DeDpo II – ''Desulfurococcus''<br />
**[[5ijl]] - PaDpo II large subunit <br />
**[[5ijl]] - PaDpo II large subunit <br />
**[[5ihe]] - PaDpo II small subunit <br />
**[[5ihe]] - PaDpo II small subunit <br />
**[[6hmf]] - PaDpo II small subunit (mutant)<br />
**[[6hmf]] - PaDpo II small subunit (mutant)<br />
**[[6hms]] - PaDpo II small+large subunits + DNA – Cryo EM <br />
**[[6hms]] - PaDpo II small+large subunits + DNA – Cryo EM <br />
-
**[[6knb]], [[6knc]] - TkPol II small+large subunits + PCNA + DNA - Thermococcus kodakarensis – Cryo EM <br />
+
**[[6knb]], [[6knc]] - TkPol II small+large subunits + PCNA + DNA - ''Thermococcus kodakarensis'' – Cryo EM <br />
**[[7rsr]], [[7rss]], [[7rsu]], [[7tqw]] - TkPol + purine derivative + DNA <br />
**[[7rsr]], [[7rss]], [[7rsu]], [[7tqw]] - TkPol + purine derivative + DNA <br />
**[[7om3]], [[7omb]], [[7omg]] - TkPol + DNA + nucleotide<br />
**[[7om3]], [[7omb]], [[7omg]] - TkPol + DNA + nucleotide<br />
Line 65: Line 65:
**[[2hnh]], [[2hqa]] - EcDpo III subunit alpha catalytic fragment<br />
**[[2hnh]], [[2hqa]] - EcDpo III subunit alpha catalytic fragment<br />
**[[4jom]] - EcDpo III alpha subunit catalytic fragment (mutant)<br />
**[[4jom]] - EcDpo III alpha subunit catalytic fragment (mutant)<br />
-
**[[5m1s]], [[5fkw]], [[5fkv]], [[5fku]] - EcDpo III (mutant) subunits + DNA – Cryo EM<br />
+
**[[5m1s]], [[5fkw]], [[5fkv]], [[5fku]] - EcDpo III alpha (mutant) beta, epsilon subunits + DNA – Cryo EM<br />
**[[1ok7]] - EcDpo III residues 1-366 + EcDpo IV C-terminal<br />
**[[1ok7]] - EcDpo III residues 1-366 + EcDpo IV C-terminal<br />
**[[2hpi]], [[2hpm]] - TaDpo III alpha subunit<br />
**[[2hpi]], [[2hpm]] - TaDpo III alpha subunit<br />
Line 91: Line 91:
**[[6ap4]] - Dpo III beta subunit – ''Acinetobacter baumannii''<br />
**[[6ap4]] - Dpo III beta subunit – ''Acinetobacter baumannii''<br />
**[[6amq]] - Dpo III beta subunit – ''Enterobacter cloacae''<br />
**[[6amq]] - Dpo III beta subunit – ''Enterobacter cloacae''<br />
-
**[[5wyp]], [[5wce]], [[6izo]], [[6jir]] - Dpo III beta subunit – ''Caulobacter crescentus''<br />
+
**[[5wce]], [[6izo]], [[6jir]] - Dpo III beta subunit – ''Caulobacter crescentus''<br />
**[[5w7z]] - RcDpo III beta subunit – ''Rickettsia conorii''<br />
**[[5w7z]] - RcDpo III beta subunit – ''Rickettsia conorii''<br />
**[[6man]] - Dpo III beta subunit – ''Rickettsia bellii''<br />
**[[6man]] - Dpo III beta subunit – ''Rickettsia bellii''<br />
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**[[6dlk]] - RrDpo III beta subunit – ''Rickettsia rickettsii''<br />
**[[6dlk]] - RrDpo III beta subunit – ''Rickettsia rickettsii''<br />
**[[6d47]] - MmDpo III beta subunit – ''Mycobacterium marinum''<br />
**[[6d47]] - MmDpo III beta subunit – ''Mycobacterium marinum''<br />
-
**[[1jqj]], [[1jql]] - EcDpo III subunit (mutant) <br />
+
**[[1jqj]], [[1jql]] - EcDpo III subunit beta,delta(mutant) <br />
**[[4tr6]] - Pol III beta subunit – Bacillus subtilis<br />
**[[4tr6]] - Pol III beta subunit – Bacillus subtilis<br />
**[[3p16]], [[3rb9]], [[4tr7]] - MtPol III beta subunit <br />
**[[3p16]], [[3rb9]], [[4tr7]] - MtPol III beta subunit <br />
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**[[5c51]], [[5c52]], [[5c53]] - hDpo III gamma subunit + DNA + nucleotide<br />
**[[5c51]], [[5c52]], [[5c53]] - hDpo III gamma subunit + DNA + nucleotide<br />
-
**[[1njf]], [[1njg]] - EcDpo III subunit  N-terminal domains 1-2<br />
+
**[[1njf]], [[1njg]] - EcDpo III subunit gamma N-terminal domains 1-2<br />
**[[2gno]] - TmDpo III gamma subunit<br />
**[[2gno]] - TmDpo III gamma subunit<br />
-
**[[1xxh]], [[1jr3]] - EcDpo III subunit ’ <br />
+
**[[1xxh]], [[1jr3]] - EcDpo III subunit gamma, delta,delta’ <br />
-
**[[1xxi]] - EcDpo III subunit ’ + nucleotide<br />
+
**[[1xxi]] - EcDpo III subunit gamma, delta,delta’ + nucleotide<br />
*DNA polymerase III subunit delta
*DNA polymerase III subunit delta
-
**[[1jqj]], [[1jql]] - EcDpo III subunit (mutant) <br />
+
**[[1jqj]], [[1jql]] - EcDpo III subunit beta,delta(mutant) <br />
**[[1a5t]] - EcDpo III subunit delta’ <br />
**[[1a5t]] - EcDpo III subunit delta’ <br />
-
**[[1xxh]], [[1jr3]] - EcDpo III subunit ’ <br />
+
**[[1xxh]], [[1jr3]] - EcDpo III subunit gamma, delta,delta’ <br />
-
**[[1xxi]] - EcDpo III subunit ’ + nucleotide<br />
+
**[[1xxi]] - EcDpo III subunit gamma, delta,delta’ + nucleotide<br />
-
**[[3glh]] - EcDpo III subunit ’<br />
+
**[[3glh]] - EcDpo III subunit delta,delta’,tau<br />
-
**[[3glf]] - EcDpo III subunit ’ DNA<br />
+
**[[3glf]] - EcDpo III subunitdelta,delta’,tau + DNA<br />
-
**[[3gli]] - EcDpo III subunit ’ DNA<br />
+
**[[3gli]] - EcDpo III subunit delta,delta’,tau, zeta + DNA<br />
-
**[[3glg]] - EcDpo III subunit ’mutant DNA<br />
+
**[[3glg]] - EcDpo III subunit delta,delta’,tau(mutant) + DNA<br />
*DNA polymerase III subunit epsilon
*DNA polymerase III subunit epsilon
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**[[2gui]] – EcDpo III subunit epsilon N-terminal<br />
**[[2gui]] – EcDpo III subunit epsilon N-terminal<br />
**[[1j53]], [[1j54]] - EcDpo III subunit epsilon N-terminal exonuclease domain<br />
**[[1j53]], [[1j54]] - EcDpo III subunit epsilon N-terminal exonuclease domain<br />
-
**[[2ido]] - EcDpo III subunit + HOT protein<br />
+
**[[2ido]] - EcDpo III subunit epsilon+ HOT protein<br />
**[[4gx8]] - EcDpo III ε subunit/ EcDpo III α subunit<br />
**[[4gx8]] - EcDpo III ε subunit/ EcDpo III α subunit<br />
**[[4gx9]] - EcDpo III ε subunit/ EcDpo III α subunit (mutant)<br />
**[[4gx9]] - EcDpo III ε subunit/ EcDpo III α subunit (mutant)<br />
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**[[6jup]], [[6juq]] - EcPol IV (mutant) + DNA + nucleotide<br />
**[[6jup]], [[6juq]] - EcPol IV (mutant) + DNA + nucleotide<br />
**[[2rdi]] - SsPol IV <br />
**[[2rdi]] - SsPol IV <br />
-
**[[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[2xca]], [[2xcp]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]], [[4juz]], [[4jv0]], [[4jv1]], [[4jv2]], [[4qw8]], [[4qw9]], [[4qwa]], [[4qwb]], [[4qwc]], [[4qwd]], [[4qwe]], [[4ruc]], [[4rua]], [[4tqr]], [[4tqs]], [[5edw]], [[6vg6]], [[6vgm]], [[[6vkp]], [6vnp]], [[7kle]], [[7klf]] - SsPol IV + DNA + nucleotide<br />
+
**[[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[2xca]], [[2xcp]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]], [[4juz]], [[4jv0]], [[4jv1]], [[4jv2]], [[4qw8]], [[4qw9]], [[4qwa]], [[4qwb]], [[4qwc]], [[4qwd]], [[4qwe]], [[4ruc]], [[4rua]], [[4tqr]], [[4tqs]], [[5edw]], [[6vg6]], [[6vgm]], [[6vkp]], [[6vnp]], [[7kle]], [[7klf]] - SsPol IV + DNA + nucleotide<br />
**[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]] - SsPol IV (mutant) + DNA + nucleotide <br />
**[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]] - SsPol IV (mutant) + DNA + nucleotide <br />
**[[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4hyk]], [[4fbt]], [[4fbu]], [[4g3i]], [[4rzr]], [[6l84]], [[6l97]] - SsPol IV + DNA<br />
**[[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4hyk]], [[4fbt]], [[4fbu]], [[4g3i]], [[4rzr]], [[6l84]], [[6l97]] - SsPol IV + DNA<br />
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**[[3uiq]], [[4dtj]], [[4dtm]], [[4dtn]], [[4dto]], [[4dtp]], [[4dtr]], [[4dts]], [[4dtu]], [[4dtx]], [[4du1]], [[4du3]], [[4du4]] - EpDpo + DNA<br />
**[[3uiq]], [[4dtj]], [[4dtm]], [[4dtn]], [[4dto]], [[4dtp]], [[4dtr]], [[4dts]], [[4dtu]], [[4dtx]], [[4du1]], [[4du3]], [[4du4]] - EpDpo + DNA<br />
**[[3nci]], [[3lds]], [[3l8b]], [[3cq8]], [[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]], [[4e3s]] - EpDpo (mutant) + DNA <br />
**[[3nci]], [[3lds]], [[3l8b]], [[3cq8]], [[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]], [[4e3s]] - EpDpo (mutant) + DNA <br />
-
**[[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[2ozs]], [[2p5g]], [[2dy4]], [[1q9x]], [[1q9y]], [[1ig9]], [[3qep]], [[3rma]], [[3rmb]], [[3rmc]], [[3rmd]], [[3rwu]], [[3s9h]], [[3scx]], [[3si6]], [[3sjj]], [[3snn]], [[3spy]], [[3spz]], [[3sq0]], [[3sq1]], [[3sq2]], [[3sq4]], [[3sun]], [[3suo]], [[3sup]], [[3suq]], [[3tab]], [[3tae]], [[3taf]], [[3tag]], [[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45]], [[5gnq]] - EpDpo (mutant) + DNA + nucleotide<br />
+
**[[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[2ozs]], [[2p5g]], [[2dy4]], [[1q9x]], [[1q9y]], [[1ig9]], [[3qep]], [[3rma]], [[3rmb]], [[3rmc]], [[3rmd]], [[3rwu]], [[3s9h]], [[3scx]], [[3si6]], [[3sjj]], [[3snn]], [[3spy]], [[3spz]], [[3sq0]], [[3sq1]], [[3sq2]], [[3sq4]], [[3sun]], [[3suo]], [[3sup]], [[3suq]], [[3tab]], [[3tae]], [[3taf]], [[3tag]], [[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45]], [[7f4y]] - EpDpo (mutant) + DNA + nucleotide<br />
-
**[[1clq]], [[3iuq]], [[7f4y]] - EpDpo + DNA + nucleotide<br />
+
**[[1clq]], [[3iuq]] - EpDpo + DNA + nucleotide<br />
**[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]], [[3qei]], [[3qer]], [[3qes]], [[3qet]], [[3qev]], [[3qew]], [[3qex]], [[3qnn]], [[3qno]], [[4fj5]], [[4fj7]], [[4fj8]], [[4fj9]], [[4fjg]], [[4fjh]], [[4fji]], [[4fjj]], [[4fjk]], [[4fjl]], [[4fjm]], [[4fjn]], [[4fjx]], [[4fk0]], [[4fk2]], [[4fk4]] - EpDpo (mutant) + DNA + nucleotide analog<br />
**[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]], [[3qei]], [[3qer]], [[3qes]], [[3qet]], [[3qev]], [[3qew]], [[3qex]], [[3qnn]], [[3qno]], [[4fj5]], [[4fj7]], [[4fj8]], [[4fj9]], [[4fjg]], [[4fjh]], [[4fji]], [[4fjj]], [[4fjk]], [[4fjl]], [[4fjm]], [[4fjn]], [[4fjx]], [[4fk0]], [[4fk2]], [[4fk4]] - EpDpo (mutant) + DNA + nucleotide analog<br />
**[[2atq]] – EpDpo + GP32<br />
**[[2atq]] – EpDpo + GP32<br />
Line 266: Line 266:
**[[2keb]] - hDpo alphaB - NMR <br />
**[[2keb]] - hDpo alphaB - NMR <br />
**[[1n5g]], [[1k0p]], [[1k18]] - hDpo alpha zinc finger domain – NMR<br />
**[[1n5g]], [[1k0p]], [[1k18]] - hDpo alpha zinc finger domain – NMR<br />
-
**[[7uy7]], [[7uy8l]] - Dpo α B subunit + DNA primase small+large subunits – ''Tetrahymena thermophile'' - Cryo EM<br />
+
**[[7uy7]], [[7uy8]] - Dpo α B subunit + DNA primase small+large subunits – ''Tetrahymena thermophile'' - Cryo EM<br />
*DNA polymerase beta
*DNA polymerase beta
**[[4ppx]] - hDpo + spiroiminohydantoin + DNA<br />
**[[4ppx]] - hDpo + spiroiminohydantoin + DNA<br />
-
**[[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp]], [[1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[1zqe]], [[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[3gdx]], [[3rh4]], [[3rh5]], [[3rh6]], [[4gxi]], [[4gxj]], [[4gxk]], [[4kld]], [[4kle]], [[4klf]], [[4klg]], [[4klh]], [[4kli]], [[4klj]], [[4kll]], [[4klm]], [[4klo]], [[4klp]], [[4klq]], [[4kls]], [[4klt]], [[4klu]], [[1zqj]], [[4lvs]], [[4m2y]], [[4m47]], [[4nlk]], [[4nln]], [[4nlz]], [[4nm1]], [[4nm2]], [[4pgy]], [[4tup]], [[4tuq]], [[4tur]], [[4tus]], [[5wo0]], [[5wnz]], [[5wny]], [[5wnx]], [[5vs4]], [[5vs3]], [[5vs2]], [[5vs1]], [[5vs0]], [[5vrz]], [[5vry]], [[5vrx]], [[5vrw]], [[5vez]], [[5v1r]], [[5v1p]], [[5v1o]], [[5v1n]], [[5v1j]], [[5v1i]], [[5v1h]], [[5v1g]], [[5v1f]], [[5ugp]], [[5ugo]], [[5ugn]], [[5u9h]], [[5u8i]], [[5u8h]], [[5u8g]], [[5u2t]], [[5u2s]], [[5u2r]], [[5tzv]], [[5tbc]], [[5tbb]], [[5tba]], [[5tb9]], [[5tb8]], [[5j2k]], [[5j2j]], [[5j2i]], [[5j2h]], [[5j2g]], [[5j2f]], [[5j2e]], [[5j2d]], [[5j2c]], [[5j2b]], [[5j2a]], [[5j29]], [[5j0y]], [[5j0x]], [[5j0w]], [[5j0u]], [[5j0t]], [[5j0s]], [[5j0r]], [[5j0q]], [[5j0p]], [[5j0o]], [[5dbc]], [[5dbb]], [[5dba]], [[5db9]], [[5db8]], [[5db7]], [[5db6]], [[6g2q]], [[6ph5]], [[7ice]], [[7icf]], [[7ici]], [[7icj]], [[7icl]], [[7icm]], [[7icp]], [[7icr]], [[7ict]], [[7icg]], [[7ich]], [[7icj]], [[7ick]], [[7icm]], [[7icn]], [[7ico]], [[7icp]], [[7icq]], [[7icr]], [[7ics]], [[7ict]], [[7icu]], [[7icv]], [[7k97]], [[8icb]], [[8icc]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icp]], [[9icw]], [[9icx]], [[9icy]] - hDpo beta + DNA<br />
+
**[[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp]], [[1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[1zqe]], [[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[3gdx]], [[3rh4]], [[3rh5]], [[3rh6]], [[4gxi]], [[4gxj]], [[4gxk]], [[4kld]], [[4kle]], [[4klf]], [[4klg]], [[4klh]], [[4kli]], [[4klj]], [[4kll]], [[4klm]], [[4klo]], [[4klq]], [[4kls]], [[4klt]], [[4klu]], [[1zqj]], [[4lvs]], [[4m2y]], [[4m47]], [[4nlk]], [[4nln]], [[4nlz]], [[4nm1]], [[4nm2]], [[4pgy]], [[4tup]], [[4tuq]], [[4tur]], [[4tus]], [[5wo0]], [[5wnz]], [[5wny]], [[5wnx]], [[5vs4]], [[5vs3]], [[5vs2]], [[5vs1]], [[5vs0]], [[5vrz]], [[5vry]], [[5vrx]], [[5vrw]], [[5vez]], [[5v1r]], [[5v1p]], [[5v1o]], [[5v1n]], [[5v1j]], [[5v1i]], [[5v1h]], [[5v1g]], [[5v1f]], [[5ugp]], [[5ugo]], [[5ugn]], [[5u9h]], [[5u8i]], [[5u8h]], [[5u8g]], [[5u2t]], [[5u2s]], [[5u2r]], [[5tzv]], [[5tbc]], [[5tbb]], [[5tba]], [[5tb9]], [[5tb8]], [[5j2k]], [[5j2j]], [[5j2i]], [[5j2h]], [[5j2g]], [[5j2f]], [[5j2e]], [[5j2d]], [[5j2c]], [[5j2b]], [[5j2a]], [[5j29]], [[5j0y]], [[5j0x]], [[5j0w]], [[5j0u]], [[5j0t]], [[5j0s]], [[5j0r]], [[5j0q]], [[5j0p]], [[5j0o]], [[5dbc]], [[5dbb]], [[5dba]], [[5db9]], [[5db8]], [[5db7]], [[5db6]], [[6g2q]], [[6ph5]], [[7ice]], [[7icf]], [[7ici]], [[7icj]], [[7icl]], [[7icm]], [[7icp]], [[7icr]], [[7ict]], [[7icg]], [[7ich]], [[7icj]], [[7ick]], [[7icm]], [[7icn]], [[7ico]], [[7icp]], [[7icq]], [[7icr]], [[7ics]], [[7ict]], [[7icu]], [[7icv]], [[7k97]], [[8icb]], [[8icc]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icp]], [[9icw]], [[9icx]], [[9icy]] - hDpo beta + DNA<br />
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**[[1bpy]], [[1mq2]], [[1mq3]], [[1zjn1]], [[2pxi]], [[2iso]], [[2isp]], [[2i9g]], [[2fmp]], [[2fmq]], [[2fms]], [[3jpn]], [[3jpo]], [[3jpp]], [[3jpq]], [[3jpr]], [[3jpt]], [[3jps]], [[3isd]], [[3c2k]], [[3c2l]], [[3c2m]], [[3rje]], [[3rjf]], [[3rjg]], [[3rjh]], [[3rji]], [[3rjj]], [[3rjk]], [[3tfr]], [[3tfs]], [[4do9]], [[4doa]], [[4dob]], [[4doc]], [[4mf2]], [[4mf8]], [[4mfa]], [[4mfc]], [[4mff]], [[4nxz]], [[4ny8]], [[4o5c]], [[4o5e]], [[4o5k]], [[4o9m]], [[4p2h]], [[4pgq]], [[4pgx]], [[4pha]], [[4phd]], [[4uaw]], [[4uay]], [[4uaz]], [[4ub1]], [[4ub2]], [[4ub3]], [[4ub4]], [[4ub5]], [[4ubb]], [[4ubc]], [[4z6f]], [[4z6e]], [[4z6d]], [[4z6c]], [[4yn4]], [[4ymo]], [[4ymn]], [[4ymm]], [[4rt3]], [[4rt2]], [[4rq8]], [[4rq7]], [[4rq6]], [[4rq5]], [[4rq4]], [[4rq3]], [[4rq2]], [[4rq1]], [[4rq0]], [[4rpz]], [[4rpy]], [[4rpx]], [[4php]], [[4phe]], [[4ph5]], [[5eoz]], [[5bpc]], [[5bom]], [[5bol]], [[7mz0]], [[7mz1]], [[7mz2]], [[7mz3]], [[7mz4]], [[7mzb]], [[7rbe]], [[7rbf]], [[7rbg]], [[7rbh]], [[7rbi]], [[7rbj]], [[7rbk]], [[7rbl]], [[7rbm]], [[7rbn]], [[7rbo]], [[7s9j]], [[7s9k]], [[7s9l]], [[7s9m]], [[7s9n]], [[7s9o]], [[7a9p]], [[7s9q]], [[8ica]], [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icy]], [[8icz]], [[9ica]], [[9icb]], [[9icc]], [[9ice]], [[9icf]], [[9icg]], [[9ich]], [[9ici]], [[9icn]], [[9ico]] [[9icq]], [[9icr]], [[9ics]], [[9ict]], [[9icu]], [[9icv]] - hDpo beta + DNA + nucleotide<br />
+
**[[1bpy]], [[1mq2]], [[1mq3]], [[1zjn]], [[2pxi]], [[2iso]], [[2isp]], [[2i9g]], [[2fmp]], [[2fmq]], [[2fms]], [[3jpn]], [[3jpo]], [[3jpp]], [[3jpq]], [[3jpr]], [[3jpt]], [[3jps]], [[3isd]], [[3c2k]], [[3c2l]], [[3c2m]], [[3rje]], [[3rjf]], [[3rjg]], [[3rjh]], [[3rji]], [[3rjj]], [[3rjk]], [[3tfr]], [[3tfs]], [[4do9]], [[4doa]], [[4dob]], [[4doc]], [[4mf2]], [[4mf8]], [[4mfa]], [[4mfc]], [[4mff]], [[4nxz]], [[4ny8]], [[4o5c]], [[4o5e]], [[4o5k]], [[4o9m]], [[4p2h]], [[4pgq]], [[4pgx]], [[4pha]], [[4phd]], [[4uaw]], [[4uay]], [[4uaz]], [[4ub1]], [[4ub2]], [[4ub3]], [[4ub4]], [[4ub5]], [[4ubb]], [[4ubc]], [[4z6f]], [[4z6e]], [[4z6d]], [[4z6c]], [[4yn4]], [[4ymo]], [[4ymn]], [[4ymm]], [[4rt3]], [[4rt2]], [[4rq8]], [[4rq7]], [[4rq6]], [[4rq5]], [[4rq4]], [[4rq3]], [[4rq2]], [[4rq1]], [[4rq0]], [[4rpz]], [[4rpy]], [[4rpx]], [[4php]], [[4phe]], [[4ph5]], [[5eoz]], [[5bpc]], [[5bom]], [[5bol]], [[7mz0]], [[7mz1]], [[7mz2]], [[7mz3]], [[7mz4]], [[7mzb]], [[7rbe]], [[7rbf]], [[7rbg]], [[7rbh]], [[7rbi]], [[7rbj]], [[7rbk]], [[7rbl]], [[7rbm]], [[7rbn]], [[7rbo]], [[7s9j]], [[7s9k]], [[7s9l]], [[7s9m]], [[7s9n]], [[7s9o]], [[7a9p]], [[7s9q]], [[8ica]], [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icy]], [[8icz]], [[9ica]], [[9icb]], [[9icc]], [[9ice]], [[9icf]], [[9icg]], [[9ich]], [[9ici]], [[9icn]], [[9ico]] [[9icq]], [[9icr]], [[9ics]], [[9ict]], [[9icu]], [[9icv]] - hDpo beta + DNA + nucleotide<br />
**[[2p66]], [[4f5n]], [[6n2t]], [[6n2s]], [[6n2r]], [[6mr8]], [[6mr7]], [[6e3x]], [[6e3w]], [[6e3v]], [[6e3r]], [[6dia]], [[6cub]], [[6cua]], [[6cu9]], [[6ctx]], [[6ctw]], [[6ctv]], [[6ctu]], [[6ctt]], [[6ctr]],
**[[2p66]], [[4f5n]], [[6n2t]], [[6n2s]], [[6n2r]], [[6mr8]], [[6mr7]], [[6e3x]], [[6e3w]], [[6e3v]], [[6e3r]], [[6dia]], [[6cub]], [[6cua]], [[6cu9]], [[6ctx]], [[6ctw]], [[6ctv]], [[6ctu]], [[6ctt]], [[6ctr]],
[[6ctq]], [[6ctp]], [[6cto]], [[6ctn]], [[6ctm]], [[6ctl]], [[6ctk]], [[6ctj]], [[6cti]], [[6crh]], [[6crc]], [[6crb]], [[6cr9]], [[6cr8]], [[6cr7]], [[6cr6]], [[6cr5]], [[6cr4]], [[6cr3]], [[6cpq]], [[6cly]], [[6bem]], [[6bel]], [[6ph6]], [[6u2o]], [[6u6b]], [[6uok]], [[6uol]], [[6uom]], [[6w2m]], [[7k96]] - hDpo beta + DNA + nucleotide analog<br />
[[6ctq]], [[6ctp]], [[6cto]], [[6ctn]], [[6ctm]], [[6ctl]], [[6ctk]], [[6ctj]], [[6cti]], [[6crh]], [[6crc]], [[6crb]], [[6cr9]], [[6cr8]], [[6cr7]], [[6cr6]], [[6cr5]], [[6cr4]], [[6cr3]], [[6cpq]], [[6cly]], [[6bem]], [[6bel]], [[6ph6]], [[6u2o]], [[6u6b]], [[6uok]], [[6uol]], [[6uom]], [[6w2m]], [[7k96]] - hDpo beta + DNA + nucleotide analog<br />
Line 346: Line 346:
**[[3wup]] - hDpo eta ubiquitin-binding zinc finger <br />
**[[3wup]] - hDpo eta ubiquitin-binding zinc finger <br />
**[[3tq1]], [[4j9k]], [[4j9l]], [[4j9m]], [[4j9n]], [[4j9o]], [[4j9p]], [[4j9q]], [[4j9r]], [[4j9s]], [[6mp3]] - hDpo eta + DNA <br />
**[[3tq1]], [[4j9k]], [[4j9l]], [[4j9m]], [[4j9n]], [[4j9o]], [[4j9p]], [[4j9q]], [[4j9r]], [[4j9s]], [[6mp3]] - hDpo eta + DNA <br />
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**[[3jaa]], [[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]], [[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno]], [[3si8]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[5l9x]], [[5l1l]], [[5l1k]], [[5l1j]], [[5l1i]], [[5kg7]], [[5kg6]], [[5kg5]], [[5kg4]], [[5kg3]], [[5kg2]], [[5kg1]], [[5kg0]], [[5kfz]], [[5kfy]], [[5kfx]], [[5kfw]], [[5kfv]], [[5kfu]], [[5kft]], [[5kfs]], [[5kfr]], [[5kfq]], [[5kfp]], [[5kfo]], [[5kfn]], [[5kfm]], [[5kfl]], [[5kfk]], [[5kfj]], [[5kfi]], [[5kfh]], [[5kfg]], [[5kff]], [[5kfe]], [[5kfd]], [[5kfc]], [[5kfb]], [[5kfa]], [[5jum]], [[5f9n]], [[5f9l]], [[5ewg]], [[5ewf]], [[5ewe]], [[5dqi]], [[5dqh]], [[5dqg]], [[5dlg]], [[5dlf]], [[5dgb]], [[5dga]], [[5dg9]], [[5dg8]], [[5dg7]], [[4yr3]], [[4yr2]], [[4yr0]], [[4yqw]], [[4yp3]], [[4ru9]], [[6mxo]], [[6m7v]], [[6m7u]], [[6m7t]], [[6m7p]], [[6m7o]], [[6d0z]], [[6d0m]], [[6mq8]], [[6pl7]], [[6pl8]], [[6plc]], [[6ui2]], [[6uqi]], [[6v5k]], [[6w5x]], [[6wk6]], [[7l69]], [[7lcd]], [[7m7l]], [[7m7m]], [[7m7n]], [[7m7o]], [[7m7p]], [[7m7q]], [[7m7r]], [[7m7s]], [[7m7t]], [[7m7u]], [[7m7y]], [[7m7z]], [[7m80]], [[7m81]], [[7m82]], [[7m83]], [[7m84]], [[7m85]], [[7m86]], [[7m87]], [[7m88]], [[7m89]], [[7m8a]], [[7m8b]], [[7m8c]], [[7m8d]], [[7u72]], [[7u73]], [[7u74]], [[7u75]], [[7u76]], [[7u77]], [[7u78]], [[7u79]], [[7u7a]], [[7u7b]], [[7u7c]], [[7u7d]], [[7u7e]], [[7u7g]], [[7u7f]], [[7u7i]], [[7u7j]], [[7u7k]], [[7u7l]], [[7u7r]], [[7u7s]], [[7u7t]], [[7u7u]], [[7u7v]], [[7u7w]], [[7u7x]], [[7u7y]], [[7u7z]], [[7u80]], [[7u81]], [[7u82]], [[7u83]], [[7u84]], [[8e85]], [[8e86]], [[8e87]], [[8e88], [[8e89]], [[8e8a]], [[8e8c]], [[8e8d]], [[8e8e]], [[8e8f]], [[8e8g], [[8e8h]], [[8e8j]], [[8e8k]] - hDpo eta + DNA + nucleotide<br />
+
**[[3jaa]], [[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]], [[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno]], [[3si8]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[5l9x]], [[5l1l]], [[5l1k]], [[5l1j]], [[5l1i]], [[5kg7]], [[5kg6]], [[5kg5]], [[5kg4]], [[5kg3]], [[5kg2]], [[5kg1]], [[5kg0]], [[5kfz]], [[5kfy]], [[5kfx]], [[5kfw]], [[5kfv]], [[5kfu]], [[5kft]], [[5kfs]], [[5kfr]], [[5kfq]], [[5kfp]], [[5kfo]], [[5kfn]], [[5kfm]], [[5kfl]], [[5kfk]], [[5kfj]], [[5kfi]], [[5kfh]], [[5kfg]], [[5kff]], [[5kfe]], [[5kfd]], [[5kfc]], [[5kfb]], [[5kfa]], [[5jum]], [[5f9n]], [[5f9l]], [[5ewg]], [[5ewf]], [[5ewe]], [[5dqi]], [[5dqh]], [[5dqg]], [[5dlg]], [[5dlf]], [[5dgb]], [[5dga]], [[5dg9]], [[5dg8]], [[5dg7]], [[4yr3]], [[4yr2]], [[4yr0]], [[4yqw]], [[4yp3]], [[4ru9]], [[6mxo]], [[6m7v]], [[6m7u]], [[6m7t]], [[6m7p]], [[6m7o]], [[6d0z]], [[6d0m]], [[6mq8]], [[6pl7]], [[6pl8]], [[6plc]], [[6ui2]], [[6uqi]], [[6v5k]], [[6w5x]], [[6wk6]], [[7l69]], [[7lcd]], [[7m7l]], [[7m7m]], [[7m7n]], [[7m7o]], [[7m7p]], [[7m7q]], [[7m7r]], [[7m7s]], [[7m7t]], [[7m7u]], [[7m7y]], [[7m7z]], [[7m80]], [[7m81]], [[7m82]], [[7m83]], [[7m84]], [[7m85]], [[7m86]], [[7m87]], [[7m88]], [[7m89]], [[7m8a]], [[7m8b]], [[7m8c]], [[7m8d]], [[7u72]], [[7u73]], [[7u74]], [[7u75]], [[7u76]], [[7u77]], [[7u78]], [[7u79]], [[7u7a]], [[7u7b]], [[7u7c]], [[7u7d]], [[7u7e]], [[7u7g]], [[7u7f]], [[7u7i]], [[7u7j]], [[7u7k]], [[7u7l]], [[7u7r]], [[7u7s]], [[7u7t]], [[7u7u]], [[7u7v]], [[7u7w]], [[7u7x]], [[7u7y]], [[7u7z]], [[7u80]], [[7u81]], [[7u82]], [[7u83]], [[7u84]], [[8e85]], [[8e86]], [[8e87]], [[8e88]], [[8e89]], [[8e8a]], [[8e8c]], [[8e8d]], [[8e8e]], [[8e8f]], [[8e8g]], [[8e8h]], [[8e8j]], [[8e8k]] - hDpo eta + DNA + nucleotide<br />
**[[6pz3]], [[6q02]] - hDpo eta (mutant) + DNA + nucleotide<br />
**[[6pz3]], [[6q02]] - hDpo eta (mutant) + DNA + nucleotide<br />
**[[5aga]] - hDpo eta + nucleotide<br />
**[[5aga]] - hDpo eta + nucleotide<br />

Current revision

3D Structures of DNA polymerase

Updated on 16-February-2023

6ctq, 6ctp, 6cto, 6ctn, 6ctm, 6ctl, 6ctk, 6ctj, 6cti, 6crh, 6crc, 6crb, 6cr9, 6cr8, 6cr7, 6cr6, 6cr5, 6cr4, 6cr3, 6cpq, 6cly, 6bem, 6bel, 6ph6, 6u2o, 6u6b, 6uok, 6uol, 6uom, 6w2m, 7k96 - hDpo beta + DNA + nucleotide analog

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

Retrieved from "http://52.214.119.220/wiki/index.php/DNA_polymerase_3D_structures"
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