8i34
From Proteopedia
(Difference between revisions)
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- | '''Unreleased structure''' | ||
- | The | + | ==The crystal structure of EPD-BCP1 from a marine sponge== |
+ | <StructureSection load='8i34' size='340' side='right'caption='[[8i34]], [[Resolution|resolution]] 2.44Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[8i34]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Haliclona_sp. Haliclona sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8I34 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8I34 FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.44Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AXT:ASTAXANTHIN'>AXT</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=O1U:(2~{Z},4~{E},6~{E},8~{E},10~{E},12~{E},14~{E},16~{E})-4,8,13,17-tetramethyl-3-oxidanyl-19-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]-1-[(1~{R},4~{S})-1,2,2-trimethyl-4-oxidanyl-cyclopentyl]nonadeca-2,4,6,8,10,12,14,16-octaen-18-yn-1-one'>O1U</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8i34 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8i34 OCA], [https://pdbe.org/8i34 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8i34 RCSB], [https://www.ebi.ac.uk/pdbsum/8i34 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8i34 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Marine animals display diverse vibrant colors, but the mechanisms underlying their specific coloration remain to be clarified. Blue coloration is known to be achieved through a bathochromic shift of the orange carotenoid astaxanthin (AXT) by the crustacean protein crustacyanin, but other examples have not yet been well investigated. Here we identified an ependymin (EPD)-related water-soluble blue carotenoprotein responsible for the specific coloration of the marine blue sponge Haliclona sp. EPD was originally identified in the fish brain as a protein involved in memory consolidation and neuronal regeneration. The purified blue protein, designated as EPD-related blue carotenoprotein-1 (EPD-BCP1), was identified as a secreted glycoprotein. We show it consists of a heterodimer that binds orange AXT and mytiloxanthin (MXT) and exhibits a bathochromic shift. Our crystal structure analysis of the natively purified EPD-BCP1 revealed that these two carotenoids are specifically bound to the heterodimer interface, where the polyene chains are aligned in parallel to each other like in beta-crustacyanin, although the two proteins are evolutionary and structurally unrelated. Furthermore, using reconstitution assays, we found incomplete bathochromic shifts occurred when the protein bound to only AXT or MXT. Taken together, we identified an EPD in a basal metazoan as a blue protein that decorates the sponge body by binding specific structurally unrelated carotenoids. | ||
- | + | An ependymin-related blue carotenoprotein decorates marine blue sponge.,Kawasaki S, Kaneko T, Asano T, Maoka T, Takaichi S, Shomura Y J Biol Chem. 2023 Jul 28:105110. doi: 10.1016/j.jbc.2023.105110. PMID:37517696<ref>PMID:37517696</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
+ | <div class="pdbe-citations 8i34" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Haliclona sp]] | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Kawasaki S]] | ||
+ | [[Category: Shomura Y]] |
Current revision
The crystal structure of EPD-BCP1 from a marine sponge
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