This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4v8n
From Proteopedia
(Difference between revisions)
| Line 4: | Line 4: | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4v8n]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3zn7 3zn7], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3zn9 3zn9], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3znd 3znd] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3zne 3zne]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V8N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V8N FirstGlance]. <br> | <table><tr><td colspan='2'>[[4v8n]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3zn7 3zn7], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3zn9 3zn9], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3znd 3znd] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3zne 3zne]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V8N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V8N FirstGlance]. <br> | ||
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AG9:AGMATIDINE'>AG9</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AG9:AGMATIDINE'>AG9</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v8n OCA], [https://pdbe.org/4v8n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v8n RCSB], [https://www.ebi.ac.uk/pdbsum/4v8n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v8n ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v8n OCA], [https://pdbe.org/4v8n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v8n RCSB], [https://www.ebi.ac.uk/pdbsum/4v8n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v8n ProSAT]</span></td></tr> | ||
</table> | </table> | ||
Current revision
The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
| |||||||||||
