8e1u
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==Propionibacterium freudenreichii PPi-dependent PEPCK in complex with malate== | |
+ | <StructureSection load='8e1u' size='340' side='right'caption='[[8e1u]], [[Resolution|resolution]] 2.65Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[8e1u]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Propionibacterium_freudenreichii_subsp._shermanii Propionibacterium freudenreichii subsp. shermanii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8E1U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8E1U FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.65Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MLT:D-MALATE'>MLT</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8e1u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8e1u OCA], [https://pdbe.org/8e1u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8e1u RCSB], [https://www.ebi.ac.uk/pdbsum/8e1u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8e1u ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/A0A160VN62_PROFR A0A160VN62_PROFR] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Phosphoenolpyruvate carboxykinases (PEPCK) are a well-studied family of enzymes responsible for the regulation of TCA cycle flux, where they catalyze the interconversion of oxaloacetic acid (OAA) and phosphoenolpyruvate (PEP) using a phosphoryl donor/acceptor. These enzymes have typically been divided into two nucleotide-dependent classes, those that use ATP and those that use GTP. In the 1960's and early 1970's, a group of papers detailed biochemical properties of an enzyme named phosphoenolpyruvate carboxytransphosphorylase (later identified as a third PEPCK) from Propionibacterium freudenreichii (PP(i) -PfPEPCK), which instead of using a nucleotide, utilized PP(i) to catalyze the same interconversion of OAA and PEP. The presented work expands upon the initial biochemical experiments for PP(i) -PfPEPCK and interprets these data considering both the current understanding of nucleotide-dependent PEPCKs and is supplemented with a new crystal structure of PP(i) -PfPEPCK in complex with malate at a putative allosteric site. Most interesting, the data are consistent with PP(i) -PfPEPCK being a Fe(2+) activated enzyme in contrast with the Mn(2+) activated nucleotide-dependent enzymes which in part results in some unique kinetic properties for the enzyme when compared to the more widely distributed GTP- and ATP-dependent enzymes. | ||
- | + | Biochemical, structural, and kinetic characterization of PP(i) -dependent phosphoenolpyruvate carboxykinase from Propionibacterium freudenreichii.,McLeod MJ, Holyoak T Proteins. 2023 May 24. doi: 10.1002/prot.26513. PMID:37226637<ref>PMID:37226637</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: Holyoak | + | <div class="pdbe-citations 8e1u" style="background-color:#fffaf0;"></div> |
- | [[Category: | + | == References == |
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Propionibacterium freudenreichii subsp. shermanii]] | ||
+ | [[Category: Holyoak T]] | ||
+ | [[Category: McLeod MJ]] |
Current revision
Propionibacterium freudenreichii PPi-dependent PEPCK in complex with malate
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