1ju5

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(New page: 200px<br /> <applet load="1ju5" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ju5" /> '''Ternary complex of an Crk SH2 domain, Crk-d...)
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[[Image:1ju5.gif|left|200px]]<br />
 
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<applet load="1ju5" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1ju5" />
 
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'''Ternary complex of an Crk SH2 domain, Crk-derived phophopeptide, and Abl SH3 domain by NMR spectroscopy'''<br />
 
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==Overview==
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==Ternary complex of an Crk SH2 domain, Crk-derived phophopeptide, and Abl SH3 domain by NMR spectroscopy==
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On phosphorylation of Y221 by Abelson (Abl) kinase, the Crk-II adapter, protein undergoes an intramolecular reorganization initiated by the, binding of its own Src homology 2 (SH2) domain to the pY221 site., Conformational changes induced by phosphotyrosine recognition promote the, binding of the Src homology 3 (SH3) domain of the Abl tyrosine kinase to a, proline-rich loop located between the betaD and betaE strands of the SH2, domain (DE loop). We have determined the NMR solution structure of the, ternary complex of the Abl SH3 domain with the Crk SH2 domain bound to a, Crk pY221 phosphopeptide. The SH2 domain bridges two ligands that bind at, distinct sites. The interaction between the Abl SH3 domain and the Crk SH2, domain is localized to a canonical eight-residue site within the DE loop., From (15)N relaxation experiments, the DE loop of the SH2 domain in the, complex displays a significant degree of conformational freedom. The, structural and dynamic data therefore indicate that these SH2 and SH3, domains do not assume a unique orientation with respect to one another;, rather, they appear to be only tethered via the DE loop. Thus, SH2, domain-SH3 domain interactions do not require additional tertiary contacts, or restriction of domain orientation when a recognition motif is presented, in a mobile loop. This complex between the Abl SH3 domain, Crk SH2 domain, and Crk phosphopeptide is an example of the extremely modular nature of, regulatory proteins that provides a rich repertoire of mechanisms for, control of biological function.
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<StructureSection load='1ju5' size='340' side='right'caption='[[1ju5]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1ju5]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JU5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JU5 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 1 model</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PTR:O-PHOSPHOTYROSINE'>PTR</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ju5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ju5 OCA], [https://pdbe.org/1ju5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ju5 RCSB], [https://www.ebi.ac.uk/pdbsum/1ju5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ju5 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CRK_HUMAN CRK_HUMAN] The Crk-I and Crk-II forms differ in their biological activities. Crk-II has less transforming activity than Crk-I. Crk-II mediates attachment-induced MAPK8 activation, membrane ruffling and cell motility in a Rac-dependent manner. Involved in phagocytosis of apoptotic cells and cell motility via its interaction with DOCK1 and DOCK4. May regulate the EFNA5-EPHA3 signaling.<ref>PMID:1630456</ref> <ref>PMID:11870224</ref> <ref>PMID:17515907</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ju/1ju5_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ju5 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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On phosphorylation of Y221 by Abelson (Abl) kinase, the Crk-II adapter protein undergoes an intramolecular reorganization initiated by the binding of its own Src homology 2 (SH2) domain to the pY221 site. Conformational changes induced by phosphotyrosine recognition promote the binding of the Src homology 3 (SH3) domain of the Abl tyrosine kinase to a proline-rich loop located between the betaD and betaE strands of the SH2 domain (DE loop). We have determined the NMR solution structure of the ternary complex of the Abl SH3 domain with the Crk SH2 domain bound to a Crk pY221 phosphopeptide. The SH2 domain bridges two ligands that bind at distinct sites. The interaction between the Abl SH3 domain and the Crk SH2 domain is localized to a canonical eight-residue site within the DE loop. From (15)N relaxation experiments, the DE loop of the SH2 domain in the complex displays a significant degree of conformational freedom. The structural and dynamic data therefore indicate that these SH2 and SH3 domains do not assume a unique orientation with respect to one another; rather, they appear to be only tethered via the DE loop. Thus, SH2 domain-SH3 domain interactions do not require additional tertiary contacts or restriction of domain orientation when a recognition motif is presented in a mobile loop. This complex between the Abl SH3 domain, Crk SH2 domain, and Crk phosphopeptide is an example of the extremely modular nature of regulatory proteins that provides a rich repertoire of mechanisms for control of biological function.
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==Disease==
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Structure of a regulatory complex involving the Abl SH3 domain, the Crk SH2 domain, and a Crk-derived phosphopeptide.,Donaldson LW, Gish G, Pawson T, Kay LE, Forman-Kay JD Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14053-8. Epub 2002 Oct 16. PMID:12384576<ref>PMID:12384576</ref>
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Known diseases associated with this structure: Leukemia, Philadelphia chromosome-positive, resistant to imatinib OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=189980 189980]]
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==About this Structure==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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1JU5 is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Active as [http://en.wikipedia.org/wiki/Transferase Transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.10.1 and 2.7.10.2 2.7.10.1 and 2.7.10.2] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1JU5 OCA].
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</div>
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<div class="pdbe-citations 1ju5" style="background-color:#fffaf0;"></div>
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==Reference==
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==See Also==
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Structure of a regulatory complex involving the Abl SH3 domain, the Crk SH2 domain, and a Crk-derived phosphopeptide., Donaldson LW, Gish G, Pawson T, Kay LE, Forman-Kay JD, Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14053-8. Epub 2002 Oct 16. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12384576 12384576]
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*[[Adapter molecule crk 3D structures|Adapter molecule crk 3D structures]]
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*[[Tyrosine kinase 3D structures|Tyrosine kinase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: Protein complex]]
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[[Category: Donaldson LW]]
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[[Category: Transferase]]
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[[Category: Forman-Kay JD]]
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[[Category: Donaldson, L.W.]]
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[[Category: Kay LE]]
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[[Category: Forman-Kay, J.D.]]
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[[Category: Pawson T]]
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[[Category: Kay, L.E.]]
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[[Category: Pawson, T.]]
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[[Category: abl]]
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[[Category: adaptor protein]]
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[[Category: crk]]
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[[Category: nmr]]
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[[Category: phosphopeptide]]
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[[Category: sh2]]
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[[Category: sh3]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 17:44:25 2007''
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Current revision

Ternary complex of an Crk SH2 domain, Crk-derived phophopeptide, and Abl SH3 domain by NMR spectroscopy

PDB ID 1ju5

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