Histone 3D structures
From Proteopedia
(Difference between revisions)
(3 intermediate revisions not shown.) | |||
Line 13: | Line 13: | ||
**[[1hst]] – cH5<br /> | **[[1hst]] – cH5<br /> | ||
**[[2xql]], [[3c9k]] - cH3.2 + H4 + H2A + H2B – Cryo EM<br /> | **[[2xql]], [[3c9k]] - cH3.2 + H4 + H2A + H2B – Cryo EM<br /> | ||
- | **[[6k01]], [[6w4l]] - XlH2A/H2B - | + | **[[6k01]], [[6w4l]] - XlH2A/H2B - Xenopus laevis <br /> |
- | **[[7pj1]] – DmH2A + H2B – | + | **[[7pj1]] – DmH2A + H2B – Drosophila melanogaster - NMR<br /> |
- | **[[6k03]] - CeH2A + H2B – | + | **[[6k03]] - CeH2A + H2B – Caenorhabditis elegans<br /> |
**[[1yqa]] – yH1 (mutant) – yeast – NMR<br /> | **[[1yqa]] – yH1 (mutant) – yeast – NMR<br /> | ||
**[[1uss]], [[1ust]], [[1uhm]] – yH1 globular domain – NMR<br /> | **[[1uss]], [[1ust]], [[1uhm]] – yH1 globular domain – NMR<br /> | ||
- | **[[1ku5]] – HPHA – | + | **[[1ku5]] – HPHA – Pyrococcus horikoshii<br /> |
- | **[[1b67]], [[1b6w]], [[1a7w]], [[1hta]] – MfHMFA – | + | **[[1b67]], [[1b6w]], [[1a7w]], [[1hta]] – MfHMFA – Methanococcus fervidus<br /> |
**[[1bfm]] – MfHB - NMR<br /> | **[[1bfm]] – MfHB - NMR<br /> | ||
- | **[[1f1e]] – H – | + | **[[1f1e]] – H – Methanopyrus kandleri<br /> |
*Histones complex with protein | *Histones complex with protein | ||
Line 28: | Line 28: | ||
**[[6h8p]] – hH1 + histone-lysine methyltransferase <br /> | **[[6h8p]] – hH1 + histone-lysine methyltransferase <br /> | ||
**[[3r45]] - hH4 + H3-like centromeric protein + Holliday junction recognition protein<br /> | **[[3r45]] - hH4 + H3-like centromeric protein + Holliday junction recognition protein<br /> | ||
- | **[[ | + | **[[3iid]], [[3iif]] – hH2A macro domain + ADP-ribose<br /> |
- | **[[5vey]] - hH2A + H2B + | + | **[[5vey]] - hH2A + H2B + polyUb<br /> |
- | **[[5fug]] - hH2A + H2B + YL-1<br /> | + | **[[5fug]], [[9inc]] - hH2A + H2B + YL-1<br /> |
**[[4nft]] - hH2A + H2B + ANP32E<br /> | **[[4nft]] - hH2A + H2B + ANP32E<br /> | ||
**[[6kbb]] - hH2A + H2B + SWR-complex protein<br /> | **[[6kbb]] - hH2A + H2B + SWR-complex protein<br /> | ||
- | **[[6miq]], [[6mio]], [[6min]] – hH3 + TFIID<br /> | ||
- | **[[6mim]], [[6mil]] – hH3 + AF9<br /> | ||
- | **[[7v6q]] – hH3.1 + H4 + NASP + ASF1A<br /> | ||
**[[7vcl]] – hH2A + H2B + BKRF4<br /> | **[[7vcl]] – hH2A + H2B + BKRF4<br /> | ||
**[[8i17]] – hH2A + H2B + SPT16<br /> | **[[8i17]] – hH2A + H2B + SPT16<br /> | ||
+ | **[[8yjf]] – hH2A + H2B + H3.1+ H4 + SPT16 + MCM2<br /> | ||
**[[7qxb]], [[7trf]] – hH2A + H2B + telomerase reverse transcriptase + RNA – Cryo EM<br /> | **[[7qxb]], [[7trf]] – hH2A + H2B + telomerase reverse transcriptase + RNA – Cryo EM<br /> | ||
**[[7qxa]] – hH2A + H2B + telomerase reverse transcriptase + adrenocortical dysplasia protein + RNA – Cryo EM<br /> | **[[7qxa]] – hH2A + H2B + telomerase reverse transcriptase + adrenocortical dysplasia protein + RNA – Cryo EM<br /> | ||
- | **[[ | + | **[[6min]], [[6mio]], [[6miq]] – hH3 + TFIID<br /> |
+ | **[[6mil]], [[6mim]] – hH3 + AF9<br /> | ||
+ | **[[8ge0]] – hH3 + JADE1<br /> | ||
+ | **[[8ihn]] – hH3 + Rpd3 + SIN3 + EAF3 + RCO1 - Cryo EM<br /> | ||
+ | **[[8z50]] – hH3.1 + H4 + ASF1A<br /> | ||
+ | **[[7v6q]] – hH3.1 + H4 + NASP + ASF1A<br /> | ||
+ | **[[8iqf]], [[8iqg]] – hH3.1 + H4 + CAF1 + RBBP4<br /> | ||
+ | **[[6vil]] – hH3.1 + BAHCC1<br /> | ||
+ | **[[5bo0]], [[5bnx]] – hH3.2 + H4 + ASF1B + MCM2<br /> | ||
**[[5ja4]], [[5bnv]] – hH3.3 + H4 + TONSL + MCM2<br /> | **[[5ja4]], [[5bnv]] – hH3.3 + H4 + TONSL + MCM2<br /> | ||
**[[7cj0]] – hH3.3 + H4 + HDJC9 + MCM2<br /> | **[[7cj0]] – hH3.3 + H4 + HDJC9 + MCM2<br /> | ||
- | **[[5bo0]], [[5bnx]] – hH3.2 + H4 + ASF1B + MCM2<br /> | ||
**[[7vcq]] – hH3.3 + H4 + ASF1B + BKRF4<br /> | **[[7vcq]] – hH3.3 + H4 + ASF1B + BKRF4<br /> | ||
- | **[[6mlc]] - hH4 + histone-lysine methyltransferase <br /> | ||
**[[6qxz]] – hH3.3 + histone-lysine methyltransferase - NMR<br /> | **[[6qxz]] – hH3.3 + histone-lysine methyltransferase - NMR<br /> | ||
- | **[[6vil]] – hH3.1 + BAHCC1<br /> | ||
**[[7ciz]] – hH3.3 + H4 + MCM2<br /> | **[[7ciz]] – hH3.3 + H4 + MCM2<br /> | ||
- | **[[ | + | **[[8vld]] – hH3.5 + histone-lysine methyltransferase <br /> |
- | **[[ | + | **[[9im4]] – hH3.5 + AF-9<br /> |
- | **[[ | + | **[[9c0o]] – hH3.5 + CFP1<br /> |
- | **[[ | + | **[[8uhl]], [[8uk5]] – hH4S1 + ATAD2B<br /> |
- | **[[ | + | **[[3nqj]], [[3nqu]] - hH4 + H3-like centromeric protein<br /> |
- | **[[ | + | **[[6mlc]] - hH4 + histone-lysine methyltransferase <br /> |
- | **[[5g2e]], [[6k00]] - XlH2A + H2B + NAP1<br /> | + | **[[5g2e]], [[6k00]], [[8xaa]] - XlH2A + H2B + NAP1<br /> |
**[[6n1z]] - XlH2A + H2B + importin<br /> | **[[6n1z]] - XlH2A + H2B + importin<br /> | ||
+ | **[[8zvy]] - XlH2A + H2B + synuclein peptide<br /> | ||
+ | **[[7unk]] - XlH3 + H4 + importin-4 + ASF1<br /> | ||
+ | **[[2io5]] - XlH3.1 + H4 + anti-silencing protein<br /> | ||
**[[5bsa]], [[5bs7]] – XlH3.2 + H4 + SPT2<br /> | **[[5bsa]], [[5bs7]] – XlH3.2 + H4 + SPT2<br /> | ||
**[[6o22]] - XlH3.2 + H4 + RTT109 + ASF1<br /> | **[[6o22]] - XlH3.2 + H4 + RTT109 + ASF1<br /> | ||
- | **[[7unk]] - XlH3 + H4 + importin-4 + ASF1<br /> | ||
**[[4eo5]] - XlH3.2 (mutant) + H4 (mutant) + ASF1<br /> | **[[4eo5]] - XlH3.2 (mutant) + H4 (mutant) + ASF1<br /> | ||
**[[4ld9]] - XlH3.2 + H4 + H2A + H2B + widom sequence reverse + SIR3<br /> | **[[4ld9]] - XlH3.2 + H4 + H2A + H2B + widom sequence reverse + SIR3<br /> | ||
+ | **[[9b2u]] – XlH3.2 (mutant) + Haspin – Cryo EM<br /> | ||
+ | **[[4h9n]], [[4h9o]], [[4h9p]], [[4h9q]], [[4h9r]], [[4h9s]], [[4hga]] - XlH3.3 (mutant) + H4 + death domain-associated protein <br /> | ||
+ | **[[5kdm]] - XlH3.3 + H4 + death domain-associated protein + tegument protein<br /> | ||
+ | **[[3qzs]], [[3qzt]] – XlH4 + nucleosome-remodeling factor subunit BPTF <br /> | ||
+ | **[[6o7g]] - XlH4 + histone-lysine methyltransferase – NMR<br /> | ||
**[[6k09]], [[6k0c]] - CeH2A + H2B + NAP1<br /> | **[[6k09]], [[6k0c]] - CeH2A + H2B + NAP1<br /> | ||
- | **[[6m2m]] – AtH2A + H2B + OSCHZ1 – | + | **[[4uuz]] – DmH3 + H4 + DNA replication licensing factor <br /> |
+ | **[[6m2m]] – AtH2A + H2B + OSCHZ1 – Arabidopsis thaliana<br /> | ||
**[[7c7x]] – AtH2A + H2B + NAP1 <br /> | **[[7c7x]] – AtH2A + H2B + NAP1 <br /> | ||
+ | **[[9b3f]] – yH2A + H2B + NAP1 – Cryo EM<br /> | ||
+ | **[[9b31]] – yH2A + H2B + NAP1 + KAP114 – Cryo EM<br /> | ||
+ | **[[9b3i]] – yH2A + H2B + NAP1 + KAP114 + GTP-binding nuclear protein – Cryo EM<br /> | ||
+ | **[[8f0x]] – yH2A + H2B + importin <br /> | ||
+ | **[[8f1e]] – yH2A + H2B + Gsp1 + importin – Cryo EM<br /> | ||
**[[2l5a]] - yH4/H3-like centromeric protein/SCM3 <br /> | **[[2l5a]] - yH4/H3-like centromeric protein/SCM3 <br /> | ||
**[[2jss]] - yH2A/H2B + CHZ1 – NMR<br /> | **[[2jss]] - yH2A/H2B + CHZ1 – NMR<br /> | ||
**[[4wnn]] – yH32A + H2B + SPT2<br /> | **[[4wnn]] – yH32A + H2B + SPT2<br /> | ||
- | **[[2hue]] - yH3 + H4 + anti-silencing protein | + | **[[2hue]] - yH3 + H4 + anti-silencing protein |
**[[7xay]] - yH3 + H4 + cytochrome b562 + ASF1<br /> | **[[7xay]] - yH3 + H4 + cytochrome b562 + ASF1<br /> | ||
- | **[[ | + | **[[9isz]], [[9it4]] – H3.1/H3.2 + histone-lysine methyltransferase – fission yeast<br /> |
- | **[[2yfv]], [[2yfw]] - KlH4 + H3-like centromeric protein + SCM3 – | + | **[[2yfv]], [[2yfw]] - KlH4 + H3-like centromeric protein + SCM3 – Kluyveromyces lactis<br /> |
- | **[[6uph]] - | + | **[[6uph]] - KlH3-like centromeric protein + H4 + H2A + H2B in nucleosome – Cryo EM<br /> |
- | **[[1pfb]] – H3 + polycomb protein – | + | **[[1pfb]] – H3 + polycomb protein – Strongylocentrus purpuratus<br /> |
*Human nucleosome core + DNA | *Human nucleosome core + DNA | ||
- | **[[3av1]], [[2av2]], [[3av2]], [[3waa]], [[3wa9]], [[3w99]], [[3w98]], [[3w97]], [[3w96]], [[5x7x]], [[3a6n]], [[3afa]], [[2cv5]], [[5jrg]], [[5gxq]], [[5gt3]], [[5gt0]], [[5gsu]], [[5gse]], [[5cpk]], [[5cpj]], [[5cpi]], [[5b33]], [[5b32]], [[5b31]], [[5b2j]], [[5b2i]], [[5b24]], [[5b0z]], [[5b0y]], [[5ay8]], [[5avc]], [[5avb]], [[5av9]], [[5av8]], [[5av6]], [[5av5]], [[5z5t]], [[4ym6]], [[4ym5]], [[5y0c]], [[5onw]], [[5ong]], [[5omx]], [[6hkt]], [[6jou]], [[6jr0]], [[6jr1]], [[6k1i]], [[6k1j]], [[6j1k]], [[6ke9]], [[6l9h]], [[6le9]], [[6ipu]], [[6iq4]], [[6jxd]], [[6kvd]], [[6ler]], [[6m3v]], [[6m44]], [[6v2k]] – hH3.1 + H4 + H2A + H2B in nucleosome<br /> | + | **[[3av1]], [[2av2]], [[3av2]], [[3waa]], [[3wa9]], [[3w99]], [[3w98]], [[3w97]], [[3w96]], [[5x7x]], [[3a6n]], [[3afa]], [[2cv5]], [[5jrg]], [[5gxq]], [[5gt3]], [[5gt0]], [[5gsu]], [[5gse]], [[5cpk]], [[5cpj]], [[5cpi]], [[5b33]], [[5b32]], [[5b31]], [[5b2j]], [[5b2i]], [[5b24]], [[5b0z]], [[5b0y]], [[5ay8]], [[5avc]], [[5avb]], [[5av9]], [[5av8]], [[5av6]], [[5av5]], [[5z5t]], [[4ym6]], [[4ym5]], [[5y0c]], [[5onw]], [[5ong]], [[5omx]], [[6hkt]], [[6jou]], [[6jr0]], [[6jr1]], [[6k1i]], [[6k1j]], [[6j1k]], [[6ke9]], [[6l9h]], [[6le9]], [[6ipu]], [[6iq4]], [[6jxd]], [[6kvd]], [[6ler]], [[6m3v]], [[6m44]], [[6v2k]], [[8qkt]], [[8yti]] – hH3.1 + H4 + H2A + H2B in nucleosome<br /> |
- | **[[ | + | **[[6l49]], [[6l4a]], [[6l9z]], [[6m4d]], [[6m4g]], [[6m4h]], [[6r0c]], [[6r25]], [[6r93]], [[6r94]], [[6t79]], [[6t93]], [[7nl0]] [[7u51]], [[7u52]], [[7u53]], [[7v90]], [[7v9c]], [[7v9j]], [[7v9k]], [[7v9s]], [[7va4]], [[7v96]], [[7xd1]], [[7xzy]], [[7y00]], [[8aag]], [[8guk]], [[8ihl]], [[8jbx]], [[8jcc]], [[8jcd]], [[8jla]], [[8jlb]], [[8jld]], [[8kb5]], [[8ke0]], [[8ooa]], [[8ox0]], [[8rgm]], [[8vlr]], [[8vmn]], [[8vo0]], [[8vws]], [[8vwu]], [[8y3c]], [[8y3d]], [[8y3e]], [[8y3f]], [[8ybj]], [[8zjt]], [[9be5]], [[9be6]], [[9d3n]], [[9d3o]], [[9d3p]], [[9d3q]], [[9d3r]], [[9d3s]], [[9d3t]]. [[9dwf]], [[9dwi]], [[9dwj]], [[9dwk]], [[9dwl]], [[9ge4]], [[9geo]], [[9gfb]] – hHistones in nucleosome – Cryo EM<br /> |
- | + | ||
**[[5z30]] – hH3.1 + H4 + H2A (mutant) + H2B in nucleosome<br /> | **[[5z30]] – hH3.1 + H4 + H2A (mutant) + H2B in nucleosome<br /> | ||
**[[5y0d]] – hH3.1 + H4 + H2A + H2B (mutant) in nucleosome<br /> | **[[5y0d]] – hH3.1 + H4 + H2A + H2B (mutant) in nucleosome<br /> | ||
Line 85: | Line 100: | ||
**[[3ayw]], [[3aze]], [[3azf]], [[3azg]], [[3azh]], [[5b40]] - hH3 (mutant) + H4 + H2A + H2B in nucleosome<br /> | **[[3ayw]], [[3aze]], [[3azf]], [[3azg]], [[3azh]], [[5b40]] - hH3 (mutant) + H4 + H2A + H2B in nucleosome<br /> | ||
**[[3azi]], [[3azj]], [[3azk]], [[3azl]], [[3azm]], [[3azn]] - hH3.1 + H4 (mutant) + H2A + H2B in nucleosome<br /> | **[[3azi]], [[3azj]], [[3azk]], [[3azl]], [[3azm]], [[3azn]] - hH3.1 + H4 (mutant) + H2A + H2B in nucleosome<br /> | ||
+ | **[[8ybk]] - hH3.1 (mutant) + H4 + H2A + H2B in nucleosome – Cryo EM<br /> | ||
**[[7lya]] - hH3.1 + H4 + H2B in nucleosome – Cryo EM<br /> | **[[7lya]] - hH3.1 + H4 + H2B in nucleosome – Cryo EM<br /> | ||
**[[6pwx]] - hH3.2 + H4 + H2A + H2B in nucleosome – Cryo EM<br /> | **[[6pwx]] - hH3.2 + H4 + H2A + H2B in nucleosome – Cryo EM<br /> | ||
- | **[[7pet]], [[7peu]], [[7pev]], [[7pew]], [[7pex]], [[7pey]], [[7pez]], [[7pf0]], [[7pf2]], [[7pf3]], [[7pf4]], [[7pf5]], [[7pf6]], [[7pfa]], [[7pfc]], [[7pfd]], [[7pfe]], [[7pff]], [[7pft]], [[7pfu]], [[7pfv]], [[7pfw]], [[7pfx]] - hH3.2 + H4 + H2A + H2B + H1.4 in nucleosome – Cryo EM<br /> | + | **[[7pet]], [[7peu]], [[7pev]], [[7pew]], [[7pex]], [[7pey]], [[7pez]], [[7pf0]], [[7pf2]], [[7pf3]], [[7pf4]], [[7pf5]], [[7pf6]], [[7pfa]], [[7pfc]], [[7pfd]], [[7pfe]], [[7pff]], [[7pft]], [[7pfu]], [[7pfv]], [[7pfw]], [[7pfx]], [[9cau]] - hH3.2 + H4 + H2A + H2B + H1.4 in nucleosome – Cryo EM<br /> |
**[[7x57]], [[7x58]] - hH3.1 + H4 in nucleosome – Cryo EM<br /> | **[[7x57]], [[7x58]] - hH3.1 + H4 in nucleosome – Cryo EM<br /> | ||
**[[5xf5]], [[5xf4]], [[5xf3]] - hH3.1 + H4 + H2A + H2B in nucleosome + Ru derivative<br /> | **[[5xf5]], [[5xf4]], [[5xf3]] - hH3.1 + H4 + H2A + H2B in nucleosome + Ru derivative<br /> | ||
Line 94: | Line 110: | ||
**[[5x0y]], [[5x0x]] – hH3 + H4 + H2A + H2B in nucleosome + SNF2<br /> | **[[5x0y]], [[5x0x]] – hH3 + H4 + H2A + H2B in nucleosome + SNF2<br /> | ||
- | **[[3an2]], [[4x23]] – hH4 + H2A + H2B in nucleosome + | + | **[[9gxa]], [[9k9l]] – hH4 + DNA + CENP-A – Cryo EM<br /> |
- | **[[7uv9]] – | + | **[[3an2]], [[4x23]] – hH4 + H2A + H2B in nucleosome + CENP-A<br /> |
+ | **[[7uv9]], [[9nqu]] – hHistones in nucleosome + lysine-specific histone demethylase – Cryo EM<br /> | ||
**[[6r25]] – hH3 + H4 + H2A + H2B in nucleosome + NPAC + lysine-specific histone demethylase – Cryo EM<br /> | **[[6r25]] – hH3 + H4 + H2A + H2B in nucleosome + NPAC + lysine-specific histone demethylase – Cryo EM<br /> | ||
**[[6r92]], [[6r91]], [[6r90]], [[6r8z]], [[6r8y]] - hH3.1 + H4 + H2A + H2B in nucleosome + DNA damage-binding protein – Cryo EM<br /> | **[[6r92]], [[6r91]], [[6r90]], [[6r8z]], [[6r8y]] - hH3.1 + H4 + H2A + H2B in nucleosome + DNA damage-binding protein – Cryo EM<br /> | ||
**[[5e5a]] - hH3.2 + H4 + H2A + H2B in nucleosome + IE1<br /> | **[[5e5a]] - hH3.2 + H4 + H2A + H2B in nucleosome + IE1<br /> | ||
+ | **[[8off]] - hHistones in nucleosome + BRCA1+ Ub – Cryo EM<br /> | ||
**[[7e8i]], [[7lyb]], [[8grq]] - hH3.1 + H4 + H2B in nucleosome + BRCA1 + BARD1 + UbCH5C – Cryo EM<br /> | **[[7e8i]], [[7lyb]], [[8grq]] - hH3.1 + H4 + H2B in nucleosome + BRCA1 + BARD1 + UbCH5C – Cryo EM<br /> | ||
**[[8grm]] - hH3.1 + H4 + H2B in nucleosome + Commd3 + Ring1B + UbCH5B – Cryo EM<br /> | **[[8grm]] - hH3.1 + H4 + H2B in nucleosome + Commd3 + Ring1B + UbCH5B – Cryo EM<br /> | ||
**[[7jzv]] - hH3.2 (mutant) + H4 + H2A + H2B in nucleosome + BRAC1 – Cryo EM<br /> | **[[7jzv]] - hH3.2 (mutant) + H4 + H2A + H2B in nucleosome + BRAC1 – Cryo EM<br /> | ||
+ | **[[9b3p]] - hH3.3 + XlH4 + mH2A + XlH2B in nucleosome – Cryo EM<br /> | ||
**[[6uxw]] - hH3.3 + H4 + H2A + H2B in nucleosome + SWI/SNF complex – Cryo EM<br /> | **[[6uxw]] - hH3.3 + H4 + H2A + H2B in nucleosome + SWI/SNF complex – Cryo EM<br /> | ||
**[[7ea8]] - hH3.3 + H4 + H2A + H2B in nucleosome + SETD2 – Cryo EM<br /> | **[[7ea8]] - hH3.3 + H4 + H2A + H2B in nucleosome + SETD2 – Cryo EM<br /> | ||
Line 115: | Line 134: | ||
**[[6x59]], [[6x5a]], [[6xjd]], [[6y5d]], [[6y5e]], [[7a08]], [[7jo9]], [[7joa]] - hH3.3 + H4 + H2A + H2B in nucleosome + cGAS – Cryo EM<br /> | **[[6x59]], [[6x5a]], [[6xjd]], [[6y5d]], [[6y5e]], [[7a08]], [[7jo9]], [[7joa]] - hH3.3 + H4 + H2A + H2B in nucleosome + cGAS – Cryo EM<br /> | ||
**[[7c0m]], [[7ccq]], [[7ccr]] - hH3.1 + H4 + H2A + H2B in nucleosome + cGAS – Cryo EM<br /> | **[[7c0m]], [[7ccq]], [[7ccr]] - hH3.1 + H4 + H2A + H2B in nucleosome + cGAS – Cryo EM<br /> | ||
- | **[[7bwd]] - hH3.1 + H4 + H2A + H2B in nucleosome + DOT1 + | + | **[[7bwd]] - hH3.1 + H4 + H2A + H2B in nucleosome + DOT1 + Ub – Cryo EM<br /> |
- | **[[7xcr]], [[7xct]] - hH4 + H2A + H2B in nucleosome + DOT1L + | + | **[[7xcr]], [[7xct]] - hH4 + H2A + H2B in nucleosome + DOT1L + Ub – Cryo EM<br /> |
- | **[[7lyc]] - hH3.1 + H4 + H2A + H2B in nucleosome + BARD1 + | + | **[[7lyc]] - hH3.1 + H4 + H2A + H2B in nucleosome + BARD1 + Ub – Cryo EM<br /> |
**[[7scy]], [[7scz]] - hH3.1 + H4 + H2A + H2B in nucleosome + PARP1 – Cryo EM<br /> | **[[7scy]], [[7scz]] - hH3.1 + H4 + H2A + H2B in nucleosome + PARP1 – Cryo EM<br /> | ||
**[[7e8d]] - hH3.1 + H4 + H2A + H2B in nucleosome + NSD2 – Cryo EM<br /> | **[[7e8d]] - hH3.1 + H4 + H2A + H2B in nucleosome + NSD2 – Cryo EM<br /> | ||
Line 123: | Line 142: | ||
**[[6t7a]], [[6t7b]], [[6t7c]], [[6t7d]] - hH3.2 + H4 + H2A + H2B in nucleosome + SOX – Cryo EM<br /> | **[[6t7a]], [[6t7b]], [[6t7c]], [[6t7d]] - hH3.2 + H4 + H2A + H2B in nucleosome + SOX – Cryo EM<br /> | ||
**[[6t90]], [[6yov]] - hH3.2 + H4 + H2A + H2B in nucleosome + SOX + OCT4 – Cryo EM<br /> | **[[6t90]], [[6yov]] - hH3.2 + H4 + H2A + H2B in nucleosome + SOX + OCT4 – Cryo EM<br /> | ||
+ | **[[8sps]], [[8spu]] - hHistones in nucleosome + scFv + OCT4 – Cryo EM<br /> | ||
+ | **[[8ott]] - hHistones in nucleosome + Myc + MAX – Cryo EM<br /> | ||
+ | **[[8ots]] - hHistones in nucleosome + OCT4 + Myc + MAX – Cryo EM<br /> | ||
**[[6rny]] - hH3.3 + H4 + H2A + H2B in nucleosome + integrase – Cryo EM<br /> | **[[6rny]] - hH3.3 + H4 + H2A + H2B in nucleosome + integrase – Cryo EM<br /> | ||
**[[6upk]], [[6upl]] - hH3.1 + H4 + H2A + H2B in nucleosome + FACT complex – Cryo EM<br /> | **[[6upk]], [[6upl]] - hH3.1 + H4 + H2A + H2B in nucleosome + FACT complex – Cryo EM<br /> | ||
Line 128: | Line 150: | ||
**[[8g57]] – hH3 + H4 + H2A + H2B in nucleosome + sirtuin 6 deacylase – Cryo EM<br /> | **[[8g57]] – hH3 + H4 + H2A + H2B in nucleosome + sirtuin 6 deacylase – Cryo EM<br /> | ||
**[[7u50]] – hH3 + H4 + H2A + H2B in nucleosome + APE1 – Cryo EM<br /> | **[[7u50]] – hH3 + H4 + H2A + H2B in nucleosome + APE1 – Cryo EM<br /> | ||
- | **[[7xzx]], [[7xzz]] – | + | **[[7xzx]], [[7xzz]], [[9r04]], [[9r2m]], [[9r2p]], [[9r2q]] – hHistones in nucleosome + p53 – Cryo EM<br /> |
- | **[[ | + | **[[7w9v]], [[8hah]], [[8hai]], [[8haj]], [[8hak]] – hHistones in nucleosome + p300 – Cryo EM<br /> |
+ | **[[8dk5]], [[8evg]], [[8jl9]], [[8vfx]] – hHistones in nucleosome + scFv – Cryo EM<br /> | ||
+ | **[[9gmk]], [[9gmr]] – hHistones in nucleosome + SIRT7 – Cryo EM<br /> | ||
+ | **[[8jnd]], [[8jne]], [[8jnf]], [[8xbt]], [[8xbu]], [[8xbw]] – hHistones in nucleosome + Rad51 – Cryo EM<br /> | ||
+ | **[[8zjr]] – hHistones in nucleosome + RFX5 – Cryo EM<br /> | ||
+ | **[[8evh]], [[8evi]], [[8evj]] – hHistones in nucleosome + scFv + Pu.1 – Cryo EM<br /> | ||
+ | **[[8jhf]], [[8jhg]] – hHistones in nucleosome + SUV420H1 – Cryo EM<br /> | ||
+ | **[[7zi4]], [[8av6]], [[8oos]], [[9cb7]], [[9cf6]], [[9gfm]] – hHhistones in nucleosome INO80 complex – Cryo EM<br /> | ||
**[[8atf]] – hH3.2 + H4 + H2A + H2B in nucleosome + INO80 + PAPA-1 domain-containing protein – Cryo EM<br /> | **[[8atf]] – hH3.2 + H4 + H2A + H2B in nucleosome + INO80 + PAPA-1 domain-containing protein – Cryo EM<br /> | ||
- | **[[7yqk]] – hH3.1 + H4 + H2A + H2B in nucleosome + | + | **[[7yqk]] – hH3.1 + H4 + H2A + H2B in nucleosome + polyUb + 53bp1 + TP53-binding protein – Cryo EM<br /> |
- | + | ||
**[[7tan]] – hH3.2 + H4 + H2A + H2B in nucleosome + VRK1 – Cryo EM<br /> | **[[7tan]] – hH3.2 + H4 + H2A + H2B in nucleosome + VRK1 – Cryo EM<br /> | ||
**[[7y8r]] - hH3 + H4 + H2A + H2B in nucleosome PBAF complex - Cryo EM<br /> | **[[7y8r]] - hH3 + H4 + H2A + H2B in nucleosome PBAF complex - Cryo EM<br /> | ||
- | **[[6fml]] – | + | **[[6fml]], [[8oo7]], [[8oop]] – hHistones in nucleosome + RuvB + actin-related protein + IES6 - Cryo EM<br /> |
+ | **[[9gcg]], [[9gev]] – hHistones in nucleosome + RuvB + actin-related protein + INO80 - Cryo EM<br /> | ||
+ | **[[9d3m]] – hHistones in nucleosome + HMG-17 - Cryo EM<br /> | ||
+ | **[[8hag]] – hHistones in nucleosome + histone acetyltransferase - Cryo EM<br /> | ||
+ | **[[8vwt]], [[8vwv]], [[9eoz]] – hHistones in nucleosome + glycosylase/DNA lyase - Cryo EM<br /> | ||
+ | **[[8txv]], [[8txw]], [[8txx]] – hHistones in nucleosome + Rnf168 + polyUb - Cryo EM<br /> | ||
+ | **[[8iej]] – hHistones in nucleosome + Rnf20 + Rnf40 + Rad6A + polyUb - Cryo EM<br /> | ||
+ | **[[8u13]] – hHistones in nucleosome + Rnf168 - Cryo EM<br /> | ||
+ | **[[8smz]], [[8sn0]], [[8sn1]], [[8sn2]], [[8sn3]], [[8sn4]], [[8sn5]], [[8sn6]], [[8sn7]], [[8sn8]], [[8sn9]], [[8sna]], [[8upf]], [[8x7i]], [[8x7j]], [[8x7k]] – hHistones in nucleosome + Rnf168 + Ub conjugating enzyme E2 + polyUb - Cryo EM<br /> | ||
+ | **[[8smw]], [[8smx]], [[8smy]], [[8u14]] – hHistones in nucleosome + Rnf168 + Ub conjugating enzyme E2 - Cryo EM<br /> | ||
+ | **[[8gui]], [[8guj]] – hHistones in nucleosome + Bre1 - Cryo EM<br /> | ||
+ | **[[8ieg]] – hHistones in nucleosome + Bre1 + Rad6A + Ub - Cryo EM<br /> | ||
+ | **[[8osj]], [[8osk]], [[8osl]] – hHistones in nucleosome + Clock + Bmal1- Cryo EM<br /> | ||
+ | **[[8kd2]], [[8kd3]] – hHistones in nucleosome + RPD3 + SIN3 + EAF3 + RCO1 - Cryo EM<br /> | ||
+ | **[[8q3m]], [[8q3x]] – hHistones in nucleosome + Kasposi sarcoma peptide<br /> | ||
+ | **[[8q36]], [[8q3e]] – hHistones in nucleosome + Foamy virus peptide<br /> | ||
+ | **[[8hal]], [[8ham]], [[8han]] – hHistones in nucleosome + CBP - Cryo EM<br /> | ||
+ | **[[9dwg]], [[9dwh]], [[9dwm]] – hHistones in nucleosome + DNA polymerase beta – Cryo EM<br /> | ||
+ | **[[8a3y]], [[8bvw]], [[8byq]], [[8bz1]], [[8h0v]], [[8h0w]] [[8he5]], [[8jh2]], [[8jh3]], [[8jh4]], [[8xrj]], [[8xvs]], [[9egx]], [[9egy]], [[9egz]], [[9eh0]], [[9eh1]], [[9eh2]], [[9ii7]], [[9j0n]], [[9j0o]], [[9j0p]] – hHistones in nucleosome + RNA polymerase complex – Cryo EM<br /> | ||
+ | **[[8rbx]] – hHistones in nucleosome + RNA polymerase complex + PP2A – Cryo EM<br /> | ||
+ | **[[8gxq]], [[8gxs]] – hHistones in nucleosome + PIC-Mediator complex– Cryo EM<br /> | ||
+ | **[[8qzm]] – hHistones in nucleosome + DNMT3 – Cryo EM<br /> | ||
+ | **[[8u5h]] – hHistones in nucleosome + DNMT + Ub – Cryo EM<br /> | ||
+ | **[[8wg5]] – hHistones in nucleosome + Usp16 + Ub – Cryo EM<br /> | ||
+ | **[[8ox1]] – hHistones in nucleosome + TRF1 – Cryo EM<br /> | ||
+ | **[[8x15]], [[8x19]], [[8x1c]], [[9ca7]], [[9ca8]], [[9caa]], [[9cab]] – hHistones in nucleosome + SRCAP-C - Cryo EM<br /> | ||
+ | **[[9j8m]], [[9j8n]], [[9j8o]] – hHistones in nucleosome + BAF + lamin – Cryo EM<br /> | ||
+ | **[[8yny]] – hHistones in nucleosome + CAS9/CSN1 – Cryo EM<br /> | ||
+ | **[[8vg0]] – hHistones in nucleosome + GATA4 – Cryo EM<br /> | ||
+ | **[[8vg1]] – hHistones in nucleosome + GATA4 + FoxA1– Cryo EM<br /> | ||
+ | **[[8j6s]], [[8j6t]] – hHistones in nucleosome + CAF-1 – Cryo EM<br /> | ||
+ | **[[8uxq]] – hHistones in nucleosome + HP1 – Cryo EM<br /> | ||
+ | **[[8vx6]] – hHistones in nucleosome + OGG1 – Cryo EM<br /> | ||
+ | **[[8kcy]], [[8kd1]], [[9l1x]], [[9l22]] – hHistones in nucleosome + DEK– Cryo EM<br /> | ||
+ | **[[8hqy]], [[8hr1]] – hHistones in nucleosome + SSX1 – Cryo EM<br /> | ||
+ | **[[9d3k]] - hHistones in nucleosome + Dsup – Cryo EM<br /> | ||
+ | **[[8vfy]], [[8vfz]] - hHistones in nucleosome + FoxA1 – Cryo EM<br /> | ||
+ | **[[8t9f]] - hHistones in nucleosome + histone-lysine methyltransferase – Cryo EM | ||
+ | **[[8bov]], [[8vnv]], [[8vnz]] - hHistones in nucleosome + PRC2 – Cryo EM<br /> | ||
+ | **[[8yv8]] - hHistones in nucleosome + CDCA7 – Cryo EM<br /> | ||
+ | **[[8ol1]] - hHistones in nucleosome + SPSB3 + ELONBC – Cryo EM<br /> | ||
+ | **[[8syp]] - hHistones in nucleosome + CX3CR1 – Cryo EM<br /> | ||
*Xenopus nucleosome core + DNA | *Xenopus nucleosome core + DNA | ||
- | **[[ | + | **[[6px1]], [[6r1t]] - XlH3 + H2A + H2B in nucleosome – Cryo EM<br /> |
- | **[[ | + | **[[1aoi]], [[1kx3]], [[1kx4]], [[1kx5]], [[1m18]], [[1m19]], [[1m1a]], [[1p34]], [[1p3a]], [[1p3b]], [[1p3f]], [[1p3g]], [[1p3i]], [[1p3k]], [[1p3l]], [[1p3m]] [[1p3o]], [[1p3p]], [[1s32]], [[1zbb]], [[2fj7]], [[2nzd]], [[3c1b]], [[3c1c]], [[3kuy]], [[3lel]], [[3lz0]], [[3lz1]], [[3mnn]], [[3o62]], [[3reh]], [[3rei]], [[3rej]], [[3rek]], [[3rel]], [[3ut9]], [[3uta]], [[3utb]], [[4z66]], [[4ys3]], [[4xzq]], [[5cp6]], [[5dnm]], [[5dnn]], [[5f99]], [[5oxv]], [[5oy7]] - XlH3.2 + H4 + H2A + H2B in nucleosome<br /> |
- | **[[6wz5]], [[6wz9]], [[7kbd]], [[7kbe]], [[7m1x]], [[7ohc]], [[7xfc]], [[7xfi]], [[7xfl]], [[7xfn]], [[7xnp]] - XlH3.2 + H4 + H2A + H2B in nucleosome - Cryo EM<br /> | + | **[[6wz5]], [[6wz9]], [[7kbd]], [[7kbe]], [[7m1x]], [[7ohc]], [[7xfc]], [[7xfi]], [[7xfl]], [[7xfn]], [[7xnp]], [[8cze]], [[8eu2]], [[8vx5]], [[8xjv]], [[9gd0]] - XlH3.2 + H4 + H2A + H2B in nucleosome - Cryo EM<br /> |
**[[7kbf]] - XlH3.2 + H4 + H2A + H2B + H1.8 in nucleosome - Cryo EM<br /> | **[[7kbf]] - XlH3.2 + H4 + H2A + H2B + H1.8 in nucleosome - Cryo EM<br /> | ||
**[[7swy]] - XlH3 (mutant) + H4 + H2A + H2B (mutant) n nucleosome - Cryo EM<br /> | **[[7swy]] - XlH3 (mutant) + H4 + H2A + H2B (mutant) n nucleosome - Cryo EM<br /> | ||
- | **[[7ktq]] - XlH3 + H4 + H2A + H2B in nucleosome – Cryo EM<br /> | + | **[[7ktq]], [[9c9x]] - XlH3 + H4 + H2A + H2B in nucleosome – Cryo EM<br /> |
- | **[[ | + | **[[6esf]], [[6esg]], [[6esh]], [[6esi]], [[6fq5]], [[6fq6]], [[6fq8]], [[6nn6]], [[6nog]], [[6nzo]], [[6px3]], [[6r1u]], [[6ugm]] - XlH3.2 + H4 + H2A + H2B in nucleosome – Cryo EM<br /> |
**[[4xuj]] - XlH3.2 + H4 + H2A + H2B in nucleosome + Ru derivative<br /> | **[[4xuj]] - XlH3.2 + H4 + H2A + H2B in nucleosome + Ru derivative<br /> | ||
**[[4xu9]] - XlH3.2 (mutant) + H4 + H2A + H2B in nucleosome + Pt derivative<br /> | **[[4xu9]] - XlH3.2 (mutant) + H4 + H2A + H2B in nucleosome + Pt derivative<br /> | ||
Line 151: | Line 220: | ||
**[[2f8n]] - XlH3.1 + H4 + H2A + H2B + H3 + H2A macro domain in nucleosome<br /> | **[[2f8n]] - XlH3.1 + H4 + H2A + H2B + H3 + H2A macro domain in nucleosome<br /> | ||
**[[1zla]] – XlH3 + H4 + H2A + H2B + H3 in nucleosome + antigen | **[[1zla]] – XlH3 + H4 + H2A + H2B + H3 in nucleosome + antigen | ||
- | **[[ | + | **[[3b6f]], [[3b6g]], [[3lja]], [[3mgp]], [[3mgq]], [[3mgr]], [[3mgs]], [[4j8u]], [[4j8v]], [[4j8w]], [[4j8x]], [[4kgc]], [[5xf6]] - XlH3.2 + H4 + H2A + H2B in nucleosome + metal<br /> |
**[[3kxb]] - XlH3.2 (mutant) + H4 + H2A + H2B (mutant) in nucleosome <br /> | **[[3kxb]] - XlH3.2 (mutant) + H4 + H2A + H2B (mutant) in nucleosome <br /> | ||
**[[3kwq]] - XlH3.2 (mutant) + H4 + H2A + H2B in nucleosome<br /> | **[[3kwq]] - XlH3.2 (mutant) + H4 + H2A + H2B in nucleosome<br /> | ||
+ | |||
*Xenopus nucleosome core + DNA complex with protein | *Xenopus nucleosome core + DNA complex with protein | ||
Line 164: | Line 234: | ||
**[[7vdt]] - XlH3 + H4 + H2A + H2B in nucleosome + BRG1 - Cryo EM<br /> | **[[7vdt]] - XlH3 + H4 + H2A + H2B in nucleosome + BRG1 - Cryo EM<br /> | ||
**[[7vdv]] - XlH3 + H4 + H2A + H2B in nucleosome PBAF complex - Cryo EM<br /> | **[[7vdv]] - XlH3 + H4 + H2A + H2B in nucleosome PBAF complex - Cryo EM<br /> | ||
- | **[[6om3]] - | + | **[[6om3]] - XlHistones in nucleosome + origin recognition complex <br /> |
+ | **[[8siy]] - XlHistones in nucleosome + origin recognition complex – Cryo EM<br /> | ||
+ | **[[8g8g]] - XlHistones in nucleosome + OCT4 – Cryo EM<br /> | ||
+ | **[[8ruq]] - XlHistones in nucleosome + borealin – Cryo EM<br /> | ||
+ | **[[8rup]] - XlHistones in nucleosome + borealin + inner centromere protein + surviving – Cryo EM<br /> | ||
+ | **[[8t3t]], [[8t3w]], [[8t3y]] - XlHistones in nucleosome + bre1 – Cryo EM<br /> | ||
**[[6vyp]] - XlH3 (mutant) + H4 + H2A (mutant) + H2B (mutant) in nucleosome + LSD1 + COREST<br /> | **[[6vyp]] - XlH3 (mutant) + H4 + H2A (mutant) + H2B (mutant) in nucleosome + LSD1 + COREST<br /> | ||
- | **[[7otq]], [[7tn2]] | + | **[[6ryr]], [[6ryu]], [[7otq]], [[7tn2]], [[9ear]], [[9gd1]], [[9gd2]], [[9gd3]], [[9nh8]] – XlHistones in nucleosome + CHD1 – Cryo EM<br /> |
**[[7cro]] - XlH3 + H4 + H2A + H2B in nucleosome + NSD2 – Cryo EM<br /> | **[[7cro]] - XlH3 + H4 + H2A + H2B in nucleosome + NSD2 – Cryo EM<br /> | ||
- | **[[8f86]] – XlH3 + H4 + H2A + H2B in nucleosome + sirtuin 6 deacylase – Cryo EM<br /> | + | **[[8f86]], [[8of4]], [[9eil]] – XlH3 + H4 + H2A + H2B in nucleosome + sirtuin 6 deacylase – Cryo EM<br /> |
- | **[[ | + | **[[7crp]], [[7crq]], [[7crr]] – XlHistones in nucleosome + NSD3 – Cryo EM<br /> |
- | **[[ | + | **[[9gen]], [[9gep]], [[9geq]], [[9ger]], [[9ihd]], [[9ihe]], [[9ihf]] – hHistones in nucleosome + myeloperoxidase – Cryo EM<br /> |
- | **[[ | + | **[[8skz]] – hHistones in nucleosome + DDM1/HELLS – Cryo EM<br /> |
**[[7at8]] - XlH3 + H4 + H2A + H2B in nucleosome + EZH2 + SUZ12 – Cryo EM<br /> | **[[7at8]] - XlH3 + H4 + H2A + H2B in nucleosome + EZH2 + SUZ12 – Cryo EM<br /> | ||
**[[6vz4]] - XlH3 + H4 + H2A + H2B in nucleosome + STH1 + ARP7 + ARP9 + RTT – Cryo EM<br /> | **[[6vz4]] - XlH3 + H4 + H2A + H2B in nucleosome + STH1 + ARP7 + ARP9 + RTT – Cryo EM<br /> | ||
Line 178: | Line 253: | ||
**[[7oh9]], [[7oha]] - XlH3.2 + H4 + H2A + H2B in nucleosome + TBP + TFIIA – Cryo EM<br /> | **[[7oh9]], [[7oha]] - XlH3.2 + H4 + H2A + H2B in nucleosome + TBP + TFIIA – Cryo EM<br /> | ||
**[[7ea5]] - XlH3 (mutant) + H4 + H2A + H2B in nucleosome + SET2 – Cryo EM<br /> | **[[7ea5]] - XlH3 (mutant) + H4 + H2A + H2B in nucleosome + SET2 – Cryo EM<br /> | ||
- | **[[6s01]], [[ | + | **[[6s01]], [[8pc5]], [[8peo]], [[8pep]] - XlH3.2 + H4 + H2A + H2B in nucleosome + PC4 and SFRS1-interacting protein – Cryo EM<br /> |
- | **[[6iy3]], [[6iy2]] - | + | **[[6iy3]], [[6iy2]], [[8v4y]], [[8v6v]], [[8v7l]], [[9e1l]], [[9e1m]], [[9e1n]], [[9e1o]], [[9e1p]], [[9e1q]], [[9e1r]], [[9e1u]], [[9e1v]], [[9e1w]], [[9e1x]], [[9e1y]] - XlHistones in nucleosome + Snf2h – Cryo EM<br /> |
**[[7eg6]] - XlH3.2 + H4 + H2A + H2B in nucleosome + SNF5 – Cryo EM<br /> | **[[7eg6]] - XlH3.2 + H4 + H2A + H2B in nucleosome + SNF5 – Cryo EM<br /> | ||
**[[7egp]] - XlH3.2 + H4 + H2A + H2B in nucleosome + SWI/SNF – Cryo EM<br /> | **[[7egp]] - XlH3.2 + H4 + H2A + H2B in nucleosome + SWI/SNF – Cryo EM<br /> | ||
**[[6ltj]] - XlH3.3 + H4 + H2A + H2B in nucleosome + BAF complex – Cryo EM<br /> | **[[6ltj]] - XlH3.3 + H4 + H2A + H2B in nucleosome + BAF complex – Cryo EM<br /> | ||
- | **[[5o9g]] - | + | **[[5o9g]], [[9n6h]], [[9n6i]], [[9n6k]] - XlHistones in nucleosome + CHD1 – Cryo EM<br /> |
+ | **[[9b2s]], [[9b2t]] - XlHistones in nucleosome + Haspin – Cryo EM<br /> | ||
+ | **[[8cbq]] - XlHistones in nucleosome + p75 – Cryo EM<br /> | ||
+ | **[[9d3l]] - XlHistones in nucleosome + Dsup – Cryo EM<br /> | ||
+ | **[[8cbn]] - XlHistones in nucleosome + LEDGF – Cryo EM<br /> | ||
**[[6x0n]] - XlH3.2 + H4 + H2A + H2B in nucleosome + PARP2 + HPF1 – Cryo EM<br /> | **[[6x0n]] - XlH3.2 + H4 + H2A + H2B in nucleosome + PARP2 + HPF1 – Cryo EM<br /> | ||
**[[7nkx]] – XlH3 + H4 + H2A + H2B in nucleosome + CHD1 + RNA polymerase – Cryo EM<br /> | **[[7nkx]] – XlH3 + H4 + H2A + H2B in nucleosome + CHD1 + RNA polymerase – Cryo EM<br /> | ||
**[[7nky]] – XlH3 + H4 + H2A + H2B in nucleosome + SPT + FACT + RNA polymerase – Cryo EM<br /> | **[[7nky]] – XlH3 + H4 + H2A + H2B in nucleosome + SPT + FACT + RNA polymerase – Cryo EM<br /> | ||
**[[6jm9]] - XlH3.2 + H4 + H2A + H2B in nucleosome + DOT1 – Cryo EM<br /> | **[[6jm9]] - XlH3.2 + H4 + H2A + H2B in nucleosome + DOT1 – Cryo EM<br /> | ||
- | **[[6jma]] - XlH3.2 + H4 + H2A + H2B in nucleosome + DOT1 + | + | **[[8g6g]], [[8g6h]], [[8g6s]], [[8v27]], [[8v28]] - XlHistones in nucleosome + Ub – Cryo EM<br /> |
- | **[[7k6p]] - XlH3.2 (mutant) + H4 + H2A + H2B (mutant) in nucleosome + DOT1 + | + | **[[6jma]] - XlH3.2 + H4 + H2A + H2B in nucleosome + DOT1 + Ub – Cryo EM<br /> |
- | **[[6nj9]] - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B in nucleosome + DOT1 + | + | **[[7k6p]] - XlH3.2 (mutant) + H4 + H2A + H2B (mutant) in nucleosome + DOT1 + Ub – Cryo EM<br /> |
- | **[[6j99]] - XlH3.2 + H4 + H2A + H2B (mutant) in nucleosome + DOT1 + | + | **[[6nj9]] - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B in nucleosome + DOT1 + Ub – Cryo EM<br /> |
- | **[[6nqa]] - XlH3.2 + H4 + H2A (mutant) + H2B (mutant) in nucleosome + DOT1 + | + | **[[6j99]] - XlH3.2 + H4 + H2A + H2B (mutant) in nucleosome + DOT1 + Ub – Cryo EM<br /> |
- | **[[6o96]] - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B (mutant) in nucleosome + DOT1 + | + | **[[6nqa]] - XlH3.2 + H4 + H2A (mutant) + H2B (mutant) in nucleosome + DOT1 + Ub – Cryo EM<br /> |
- | **[[7k6q]] - XlH3.2 (mutant) + H4 (mutant) + H2A (mutant) + H2B (mutant) in nucleosome + DOT1 + | + | **[[6o96]] - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B (mutant) in nucleosome + DOT1 + Ub – Cryo EM<br /> |
- | **[[6ftx]] - XlH3.1 + H4 + H2A + H2B in nucleosome + CHD1 + | + | **[[7k6q]] - XlH3.2 (mutant) + H4 (mutant) + H2A (mutant) + H2B (mutant) in nucleosome + DOT1 + Ub – Cryo EM<br /> |
+ | **[[6ftx]] - XlH3.1 + H4 + H2A + H2B in nucleosome + CHD1 + Ub – Cryo EM<br /> | ||
**[[6hts]] - XlH3.1 + H4 + H2A + H2B in nucleosome + RuvB + CHD1 + actin-related protein – Cryo EM<br /> | **[[6hts]] - XlH3.1 + H4 + H2A + H2B in nucleosome + RuvB + CHD1 + actin-related protein – Cryo EM<br /> | ||
+ | **[[9ge5]] - XlHistones in nucleosome + RuvB + INO80 – Cryo EM<br /> | ||
**[[6ne3]] - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B in nucleosome + SNF2H – Cryo EM<br /> | **[[6ne3]] - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B in nucleosome + SNF2H – Cryo EM<br /> | ||
**[[5mlu]] - XlH3.2 + H4 + H2A + H2B in nucleosome + PFV GAG peptide<br /> | **[[5mlu]] - XlH3.2 + H4 + H2A + H2B in nucleosome + PFV GAG peptide<br /> | ||
- | **[[5kgf]] - XlH3.2 + H4 + H2A + H2B in nucleosome + 53BP1 + | + | **[[5kgf]] - XlH3.2 + H4 + H2A + H2B in nucleosome + 53BP1 + Ub<br /> |
**[[5hq2]] - XlH3.2 + H4 + H2A + H2B in nucleosome + SRM1 + SetD8<br /> | **[[5hq2]] - XlH3.2 + H4 + H2A + H2B in nucleosome + SRM1 + SetD8<br /> | ||
- | **[[6ven]] - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B (mutant) in nucleosome + COMPASS + | + | **[[6ven]] - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B (mutant) in nucleosome + COMPASS + Ub – Cryo EM<br /> |
- | **[[6uh5]] - XlH3.2 + H4 + H2A + H2B (mutant) in nucleosome + COMPASS + | + | **[[6uh5]] - XlH3.2 + H4 + H2A + H2B (mutant) in nucleosome + COMPASS + Ub – Cryo EM<br /> |
**[[6z6p]] - XlH3.2 + H3 + H4 + H2A + H2B in nucleosome + HDA1 – Cryo EM<br /> | **[[6z6p]] - XlH3.2 + H3 + H4 + H2A + H2B in nucleosome + HDA1 – Cryo EM<br /> | ||
- | **[[6pa7]] - XlH3.2 + H4 + H2A + H2B in nucleosome + DNMT3 – Cryo EM<br /> | + | **[[6pa7]], [[8uw1]] - XlH3.2 + H4 + H2A + H2B in nucleosome + DNMT3 – Cryo EM<br /> |
+ | **[[8t9g]], [[8tas]], [[8tb9]], [[8vmj]] - XlHistones in nucleosome + PRC2 – Cryo EM<br /> | ||
**[[6wkr]] - XlH3.2 + H3 + H4 + H2A + H2B in nucleosome + PRC2 + JARID2 – Cryo EM<br /> | **[[6wkr]] - XlH3.2 + H3 + H4 + H2A + H2B in nucleosome + PRC2 + JARID2 – Cryo EM<br /> | ||
**[[6lth]] - XlH3.2 + H3 + H4 + H2A + H2B in nucleosome + BAF complex – Cryo EM<br /> | **[[6lth]] - XlH3.2 + H3 + H4 + H2A + H2B in nucleosome + BAF complex – Cryo EM<br /> | ||
- | **[[6zhx]], [[6zhy]], [[7enn]] - XlH3.2 + H3 + H4 + H2A + H2B in nucleosome + ALC1 – Cryo EM<br /> | + | **[[6zhx]], [[6zhy]], [[7enn]], [[8b0a]] - XlH3.2 + H3 + H4 + H2A + H2B in nucleosome + ALC1 – Cryo EM<br /> |
**[[6tem]] - XlH4 + H2A + H2B in nucleosome + CenP-A – Cryo EM<br /> | **[[6tem]] - XlH4 + H2A + H2B in nucleosome + CenP-A – Cryo EM<br /> | ||
**[[7u4d]] - XlH4 + H2A + H2B in nucleosome + CenP-A + Cenp-N – Cryo EM<br /> | **[[7u4d]] - XlH4 + H2A + H2B in nucleosome + CenP-A + Cenp-N – Cryo EM<br /> | ||
- | **[[4zux]] – XlH3.2 + H4 + H2A + H2B in nucleosome + Saga-associated factors + | + | **[[4zux]] – XlH3.2 + H4 + H2A + H2B in nucleosome + Saga-associated factors + polyUb + UBP8<br /> |
**[[3mvd]] - XlH3.2 + H4 + H2A + H2B in nucleosome + regulator of chromosome condensation<br /> | **[[3mvd]] - XlH3.2 + H4 + H2A + H2B in nucleosome + regulator of chromosome condensation<br /> | ||
**[[3tu4]] - XlH3.2 + H4 + H2A + H2B in nucleosome + regulatory protein SIR3<br /> | **[[3tu4]] - XlH3.2 + H4 + H2A + H2B in nucleosome + regulatory protein SIR3<br /> | ||
**[[4r8p]] - XlH3.2 + H4 + H2A + H2B in nucleosome + polycomb complex protein + ring finger protein<br /> | **[[4r8p]] - XlH3.2 + H4 + H2A + H2B in nucleosome + polycomb complex protein + ring finger protein<br /> | ||
- | **[[6k1p]], [[6jyl]], [[6iro]] – | + | **[[6k1p]], [[6jyl]], [[6iro]], [[9jnp]], [[9jnt]], [[9jnu]], [[9jnv]], [[9jnw]], [[9jnx]], [[9jnz]], [[9jo2]], [[9jo5]], [[9liu]], [[9lj2]] – XlHistones in nucleosome + iswI – Cryo EM<br /> |
+ | **[[9dgg]] – XlHistones in nucleosome + bmi-1 + ring2 – Cryo EM<br /> | ||
+ | **[[9dg3]] – XlHistones in nucleosome + ring1 + Ub – Cryo EM<br /> | ||
+ | **[[9dby]] – XlHistones in nucleosome + bmi-1 + ring1 + ring2 + Ub – Cryo EM<br /> | ||
+ | **[[8hxz]], [[8ihm]] – XlHistones + EAF3 - Cryo EM<br /> | ||
+ | **[[8hxy]], [[8iht]], [[8jho]], [[8kd4]], [[8kd5]], [[8kd6]], [[8kd7]], [[8tof]] – XlHistones + Rpd3 + SIN3 + EAF3 + RCO1 - Cryo EM<br /> | ||
**[[6kw3]], [[6kw4]], [[6kw5]], [[6tda]] – XlH3 + H4 + H2A + H2B in nucleosome + RSC complex – Cryo EM<br /> | **[[6kw3]], [[6kw4]], [[6kw5]], [[6tda]] – XlH3 + H4 + H2A + H2B in nucleosome + RSC complex – Cryo EM<br /> | ||
**[[6rny]] - hH3.3 + H4 + H2A + H2B in nucleosome + integrase – Cryo EM<br /> | **[[6rny]] - hH3.3 + H4 + H2A + H2B in nucleosome + integrase – Cryo EM<br /> | ||
Line 223: | Line 310: | ||
**[[7xfh]], [[7xfm]] - XlH3.2 + H4 + H2A + H2B in nucleosome + ADPG – Cryo EM<br /> | **[[7xfh]], [[7xfm]] - XlH3.2 + H4 + H2A + H2B in nucleosome + ADPG – Cryo EM<br /> | ||
**[[8gpn]] - XlH3.2 + H4 + H2A + H2B in nucleosome + menin – Cryo EM<br /> | **[[8gpn]] - XlH3.2 + H4 + H2A + H2B in nucleosome + menin – Cryo EM<br /> | ||
- | **[[ | + | **[[8pc6]] - XlH3.2 + H4 + H2A + H2B in nucleosome + PC4 and SFRS1-interacting protein – Cryo EM<br /> |
**[[7ssa]] - XlH3.2 + H4 + H2A + H2B in nucleosome + Cbf1 – Cryo EM<br /> | **[[7ssa]] - XlH3.2 + H4 + H2A + H2B in nucleosome + Cbf1 – Cryo EM<br /> | ||
+ | **[[8cww]] – XlHistones in nucleosome + HOP1 – Cryo EM<br /> | ||
+ | **[[9jao]] – XlHistones in nucleosome + hHEL1 – Cryo EM<br /> | ||
+ | **[[9qaj]] – XlHistones in nucleosome + BCL7A – Cryo EM<br /> | ||
+ | **[[8g6q]], [[8v25]], [[8v26]] – XlHistones in nucleosome + Ub – Cryo EM<br /> | ||
+ | **[[8ett]], [[8etv]], [[8eue]], [[8euj]], [[9c9g]], [[9c9t]] – XlHhistones in nucleosome INO80 complex – Cryo EM<br /> | ||
+ | **[[9cg9]] – XlHistones in nucleosome + HMG-1 - Cryo EM<br /> | ||
+ | |||
+ | *Yeast nucleosome core + DNA complex with protein | ||
+ | |||
+ | **[[6j51]], [[6j50]], [[6j4z]], [[6j4y]], [[6j4x]], [[6j4w]], [[6inq]], [[6i84]], [[6a5u]], [[6a5t]], [[6a5r]], [[6a5p]], [[6a5o]], [[6a5l]], [[7zs9]], [[7zsa]], [[7zsb]], [[8ceo]] – yH3.3 + H4 + H2A + H2B in nucleosome + RNA polymerase + RNA – Cryo EM<br /> | ||
+ | **[[6ir9]] – yH3.3 + H4 + H2A + H2B in nucleosome + RNA polymerase + SPT4 + SPT5 + RNA – Cryo EM<br /> | ||
+ | **[[6gen]], [[6gej]] – yH3 + H4 + H2A + H2B in nucleosome + SWI1 + actin-like protein + vacuolar protein sorting-associated + RNA – Cryo EM<br /> | ||
+ | **[[1id3]] - yH3 + H4 + H2A + H2B in nucleosome <br /> | ||
+ | **[[4jjn]], [[4kud]] - yH3 + H4 + H2A.2 + H2B.2 in nucleosome + SIR3 <br /> | ||
+ | **[[8qku]], [[8qkv]], [[8qyv]], [[9b1e]], [[9fbw]] - yHistones in nucleosome + SWR1 – Cryo EM<br /> | ||
+ | **[[8xgc]] - yHistones in nucleosome + replisome – Cryo EM<br /> | ||
+ | **[[5zba]], [[5zbb]] - yH3 + H4 + RTT109 + ASF1<br /> | ||
+ | **[[8ghm]], [[8ghn]] - yH3 + H4 + HIR1+ histone chaperon + histone transcription regulator + histone promoter conrol protein – Cryo EM<br /> | ||
+ | **[[5z3v]], [[5z3u]], [[5z3o]], [[5z3l]] - yH3.2 + H4 + H2A + H2B in nucleosome + SNF2 – Cryo EM<br /> | ||
+ | **[[7k7g]] - yH3 + H4 + H2A + H2B in nucleosome + CenP-3 – Cryo EM<br /> | ||
+ | **[[7z0o]] - yH3 + H4 + H2A + H2B in nucleosome + RNA polymerase transcription initiation factors – Cryo EM<br /> | ||
+ | **[[7e9c]], [[7e9f]] - yH3 + H4 + H2A + H2B in nucleosome + origin recognition complex subunit 1 – Cryo EM<br /> | ||
+ | **[[6qld]], [[8ow0]] - yH3 + H4 + H2A + H2B in kinetochore + CenP-A – Cryo EM<br /> | ||
+ | **[[7on1]] - yH4 + H2A + H2B in nucleosome + CenP-A + CenP-C – Cryo EM<br /> | ||
+ | **[[7k78]] - yH4 + H2A + H2B in nucleosome + Sce4 + ScfV – Cryo EM<br /> | ||
+ | **[[8x2x]], [[8x2y]], [[8x2z]], [[8x30]], [[8x31]], [[8x32]] - yHistones in nucleosome + EAF6 + chromatin modification-related protein + histone acetyltransferase + glutathione transferase – Cryo EM<br /> | ||
+ | **[[8w9c]], [[8w9d]], [[8w9e]], [[8w9f]] – yH3 + Rpd3 + SIN3 + EAF3 + RCO1 - Cryo EM<br /> | ||
*Other nucleosome core + DNA | *Other nucleosome core + DNA | ||
Line 232: | Line 346: | ||
**[[7dbh]], [[7vbm]] – mH3mm18 + H4 + H2A + H2B in nucleosome – Cryo EM<br /> | **[[7dbh]], [[7vbm]] – mH3mm18 + H4 + H2A + H2B in nucleosome – Cryo EM<br /> | ||
**[[1f66]] - XlH3 + mH4 + hH2A + XlH2B in nucleosome <br /> | **[[1f66]] - XlH3 + mH4 + hH2A + XlH2B in nucleosome <br /> | ||
- | **[[5b1m]], [[5b1l]] - | + | **[[5b1m]], [[5b1l]] - mHistones in nucleosome<br /> |
+ | **[[8pkj]] - mHistones in nucleosome – Cryo EM<br /> | ||
+ | **[[8pki]] - mHistones in nucleosome + LRH1 – Cryo EM<br /> | ||
**[[2aro]], [[1tzy]], [[1hq3]], [[2hio]], [[1hio]] - cH3 + H4 + H2A + H2B | **[[2aro]], [[1tzy]], [[1hq3]], [[2hio]], [[1hio]] - cH3 + H4 + H2A + H2B | ||
**[[1eqz]] - cH3 + H4 + H2A + H2B in nucleosome <br /> | **[[1eqz]] - cH3 + H4 + H2A + H2B in nucleosome <br /> | ||
**[[2pyo]], [[3nqb]], [[2nqb]] - DmH3 + H4 + H2A + H2B in nucleosome <br /> | **[[2pyo]], [[3nqb]], [[2nqb]] - DmH3 + H4 + H2A + H2B in nucleosome <br /> | ||
- | **[[6pwe]] - DmH3 + H4 + H2A + H2B in nucleosome – Cryo EM<br /> | + | **[[6pwe]], [[9mu4]], [[9mu5]] - DmH3 + H4 + H2A + H2B in nucleosome – Cryo EM<br /> |
**[[6pwf]] - DmH3 + H4 + H2A + H2B in nucleosome + chromatin remodeling factor – Cryo EM<br /> | **[[6pwf]] - DmH3 + H4 + H2A + H2B in nucleosome + chromatin remodeling factor – Cryo EM<br /> | ||
+ | **[[8ux1]] - DmHistones in nucleosome + RAN + RCC1 – Cryo EM<br /> | ||
+ | **[[8pp6]], [[8pp7]] - DmHistones in nucleosome + RYBP + PRC1 – Cryo EM<br /> | ||
**[[5wcu]] - DmH3 + H4 + H2A + H2B + H5 in nucleosome<br /> | **[[5wcu]] - DmH3 + H4 + H2A + H2B + H5 in nucleosome<br /> | ||
**[[4x23]] - DmH3 + H4 + H2A + H2B in nucleosome + Cenp-C <br /> | **[[4x23]] - DmH3 + H4 + H2A + H2B in nucleosome + Cenp-C <br /> | ||
**[[6dzt]] - DmH3 + H4 + H2A + H2B in nucleosome + antibody <br /> | **[[6dzt]] - DmH3 + H4 + H2A + H2B in nucleosome + antibody <br /> | ||
**[[6xws]], [[6xwt]] - DmH4 + CenP-A + CAL1 <br /> | **[[6xws]], [[6xwt]] - DmH4 + CenP-A + CAL1 <br /> | ||
- | **[[ | + | **[[8j91]], [[8j92]], [[8whb]], [[9k3z]], [[9k40]], [[9k41]], [[9k42]], [[9k43]] - AtHistones in nucleosome – Cryo EM<br /> |
- | **[[ | + | **[[8j90]], [[8kcb]], [[8kcc]], [[8wh5]], [[8wh8]], [[8wh9]], [[8wha]] - AtHistones in nucleosome + DDM1 – Cryo EM<br /> |
- | + | **[[9mu9]] – AtHistones in nucleosome + RNA polymerase complex – Cryo EM<br /> | |
- | + | **[[8q15]] - Histones in nucleosome – rice - Cryo EM<br /> | |
- | + | **[[6kxv]] - H3 + H4 + H2A + H2B in nucleosome – Leishmania major<br /> | |
- | + | **[[7d69]] - H3 + H4 + H2A + H2B in nucleosome – Giardia intestinalis – Cryo EM<br /> | |
- | + | **[[7wlr]] - H3 + H4 + H2A + H2B in nucleosome – Komagataella pastoris – Cryo EM<br /> | |
- | **[[ | + | **[[8com]] – Histones in nucleosome – Trypanosoma brucei – Cryo EM<br /> |
- | + | ||
- | + | ||
- | **[[ | + | |
- | + | ||
- | + | ||
- | **[[6kxv]] - H3 + H4 + H2A + H2B in nucleosome – | + | |
- | **[[7d69]] - H3 + H4 + H2A + H2B in nucleosome – | + | |
- | **[[7wlr]] - H3 + H4 + H2A + H2B in nucleosome – | + | |
- | **[[ | + | |
**[[7lv8]], [[7lv9]] - H3 + H4 + H2A + H2B in nucleosome – Marseillevirus – Cryo EM<br /> | **[[7lv8]], [[7lv9]] - H3 + H4 + H2A + H2B in nucleosome – Marseillevirus – Cryo EM<br /> | ||
+ | **[[8ua7]] – Histones in nucleosome - medusavirus – Cryo EM<br /> | ||
+ | **[[7n8n]], [[9cvt]] – Histones in nucleosome - melbournevirus – Cryo EM<br /> | ||
*Chromatosome core + DNA | *Chromatosome core + DNA | ||
Line 265: | Line 376: | ||
**[[6la2]], [[6la8]], [[6la9]], [[6lab]], [[7cow]] - hH3.1 + H4 + H2A + H2B + H1.0 in chromatosome <br /> | **[[6la2]], [[6la8]], [[6la9]], [[6lab]], [[7cow]] - hH3.1 + H4 + H2A + H2B + H1.0 in chromatosome <br /> | ||
**[[7dbp]] - hH3.1 + H4 + H2A + H2B + H1.0 in chromatosome – Cryo EM<br /> | **[[7dbp]] - hH3.1 + H4 + H2A + H2B + H1.0 in chromatosome – Cryo EM<br /> | ||
- | + | ||
**[[7k5x]], [[7k5y]], [[7k60]], [[7k61]], [[7k63]] - hH3.1 + H4 + H2A + H2B + H1.0 in chromatosome + scFv – Cryo EM<br /> | **[[7k5x]], [[7k5y]], [[7k60]], [[7k61]], [[7k63]] - hH3.1 + H4 + H2A + H2B + H1.0 in chromatosome + scFv – Cryo EM<br /> | ||
- | **[[5nl0]] - XlH3.2 + H4 + H2A + H2B + H1.0 in chromatosome<br | + | **[[5nl0]] - XlH3.2 + H4 + H2A + H2B + H1.0 in chromatosome<br /> |
+ | **[[9ipu]] - hHistones in chromatosome + RNF168 + Ub-conjugating enzyme + Ub – Cryo EM<br /> | ||
+ | **[[9dde]] - hHistones in chromatosome + BMI-1 + Ring1 + Ring2 + Ub – Cryo EM<br /> | ||
+ | **[[8vg2]] – hHistones in chromatosome + GATA4 + FoxA1– Cryo EM | ||
}} | }} | ||
[[Category:Topic Page]] | [[Category:Topic Page]] |
Current revision
3D Structures of histone
Updated on 14-September-2025