8p64
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 8p64 is ON HOLD Authors: Plewka, J., Magiera-Mularz, K., van der Straat, R., Draijer, R., Surmiak, E., Butera, R., Land, L., Musielak, B., Domling, ...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Co-crystal structure of PD-L1 with low molecular weight inhibitor== | |
| + | <StructureSection load='8p64' size='340' side='right'caption='[[8p64]], [[Resolution|resolution]] 3.31Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[8p64]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8P64 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8P64 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.312Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=X1Q:~{N}-[[1-[(~{E})-2-(2-methyl-3-phenyl-phenyl)ethenyl]-1,2,3,4-tetrazol-5-yl]methyl]ethanamine'>X1Q</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8p64 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8p64 OCA], [https://pdbe.org/8p64 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8p64 RCSB], [https://www.ebi.ac.uk/pdbsum/8p64 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8p64 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The progress in cancer survival and treatment has witnessed a remarkable transformation through the innovative approach of targeting the inhibitory immune checkpoint protein PD-1/PD-L1 complex by mAbs, e.g. pembrolizumab (Keytruda). While generating 17.2 billion U.S. dollars in revenue in 2021, the true significance of these developments lies in their ability to enhance cancer patient outcomes. Despite the proven efficacy of mAbs in inhibiting the PD-1/PD-L1 signaling pathways, they face significant challenges, including limited response rates, high production costs, missing oral bioavailability, and extended half-lives that can lead to immune-related adverse effects. A promising alternative approach involves the use of small molecules acting as PD-1/PD-L1 antagonists to stimulate PD-L1 dimerization. However, the precise mechanisms of action of these molecules remain partially understood, posing challenges to their development. In this context, our research focuses on the creation of a novel scaffold based on the Ugi tetrazole four-component reaction (UT-4CR) to develop low-molecular-weight inhibitors of PD-L1. Employing structure-based methods, we synthesized a library of small compounds using biphenyl vinyl isocyanide, leading to the discovery of a structure-activity relationship among 1,5-disubstituted tetrazole-based inhibitors. Supported by a cocrystal structure with PD-L1, these inhibitors underwent biophysical testing, including HTRF and protein NMR experiments, resulting in the identification of potent candidates with sub-micromolar PD-L1 affinities. This finding opens opportunities to the further development of a new class of PD-L1 antagonists, holding promise for improved cancer immunotherapy strategies. | ||
| - | + | 1,5-Disubstituted tetrazoles as PD-1/PD-L1 antagonists.,van der Straat R, Draijer R, Surmiak E, Butera R, Land L, Magiera-Mularz K, Musielak B, Plewka J, Holak TA, Domling A RSC Med Chem. 2024 Feb 21;15(4):1210-1215. doi: 10.1039/d3md00746d. eCollection , 2024 Apr 24. PMID:38665826<ref>PMID:38665826</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 8p64" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | == References == |
| - | [[Category: | + | <references/> |
| - | [[Category: | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | [[Category: Magiera-Mularz | + | [[Category: Homo sapiens]] |
| - | [[Category: Musielak | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Butera R]] |
| - | [[Category: Van | + | [[Category: Domling A]] |
| + | [[Category: Draijer R]] | ||
| + | [[Category: Land L]] | ||
| + | [[Category: Magiera-Mularz K]] | ||
| + | [[Category: Musielak B]] | ||
| + | [[Category: Plewka J]] | ||
| + | [[Category: Surmiak E]] | ||
| + | [[Category: Van der Straat R]] | ||
Current revision
Co-crystal structure of PD-L1 with low molecular weight inhibitor
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