This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1l9g

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:31, 14 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1l9g.gif|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF URACIL-DNA GLYCOSYLASE FROM T. MARITIMA==
-
The line below this paragraph, containing "STRUCTURE_1l9g", creates the "Structure Box" on the page.
+
<StructureSection load='1l9g' size='340' side='right'caption='[[1l9g]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1l9g]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L9G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L9G FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1l9g| PDB=1l9g | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l9g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l9g OCA], [https://pdbe.org/1l9g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l9g RCSB], [https://www.ebi.ac.uk/pdbsum/1l9g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l9g ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1l9g TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/UDGA_THEMA UDGA_THEMA] Removes uracil bases that are present in DNA as a result of either deamination of cytosine or misincorporation of dUMP instead of dTMP. Can remove uracil from double-stranded DNA containing either a U/G or U/A base pair as well as from single-stranded DNA.<ref>PMID:10339434</ref> <ref>PMID:11267830</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l9/1l9g_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1l9g ConSurf].
 +
<div style="clear:both"></div>
-
'''CRYSTAL STRUCTURE OF URACIL-DNA GLYCOSYLASE FROM T. MARITIMA'''
+
==See Also==
-
 
+
*[[DNA glycosylase 3D structures|DNA glycosylase 3D structures]]
-
 
+
== References ==
-
==About this Structure==
+
<references/>
-
1L9G is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L9G OCA].
+
__TOC__
-
[[Category: Single protein]]
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
-
[[Category: Almo, S C.]]
+
[[Category: Almo SC]]
-
[[Category: Bresnik, A.]]
+
[[Category: Bresnik A]]
-
[[Category: Burley, S K.]]
+
[[Category: Burley SK]]
-
[[Category: Chance, M R.]]
+
[[Category: Chance MR]]
-
[[Category: Dodatko, T.]]
+
[[Category: Dodatko T]]
-
[[Category: Franklin, W A.]]
+
[[Category: Franklin WA]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Rajashankar KR]]
-
[[Category: Rajashankar, K R.]]
+
[[Category: Sandigursky M]]
-
[[Category: Sandigursky, M.]]
+
[[Category: Thirumuruhan RA]]
-
[[Category: Thirumuruhan, R A.]]
+
-
[[Category: Base excision repair]]
+
-
[[Category: Dna glycosylase]]
+
-
[[Category: New york structural genomix research consortium]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Thermophile]]
+
-
[[Category: Uracil]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 23:41:42 2008''
+

Current revision

CRYSTAL STRUCTURE OF URACIL-DNA GLYCOSYLASE FROM T. MARITIMA

PDB ID 1l9g

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1l9g"
Personal tools