This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5d4v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:24, 10 January 2024) (edit) (undo)
 
Line 4: Line 4:
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5d4v]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D4V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5D4V FirstGlance]. <br>
<table><tr><td colspan='2'>[[5d4v]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D4V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5D4V FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=YGP:5-O-[(R)-[(3,6-DIMETHYL-2-OXO-1,2-DIHYDROPYRIDIN-4-YL)OXY](HYDROXY)PHOSPHORYL]GUANOSINE'>YGP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=YGP:5-O-[(R)-[(3,6-DIMETHYL-2-OXO-1,2-DIHYDROPYRIDIN-4-YL)OXY](HYDROXY)PHOSPHORYL]GUANOSINE'>YGP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5d4v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d4v OCA], [https://pdbe.org/5d4v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5d4v RCSB], [https://www.ebi.ac.uk/pdbsum/5d4v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5d4v ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5d4v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d4v OCA], [https://pdbe.org/5d4v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5d4v RCSB], [https://www.ebi.ac.uk/pdbsum/5d4v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5d4v ProSAT]</span></td></tr>
</table>
</table>

Current revision

HcgC with SAH and a guanylylpyridinol (GP) derivative

PDB ID 5d4v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools