8qdf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:57, 5 June 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 8qdf is ON HOLD until Paper Publication
+
==Engineered LmrR with Met-89 replaced by para-boronophenylalanine==
 +
<StructureSection load='8qdf' size='340' side='right'caption='[[8qdf]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[8qdf]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._cremoris_MG1363 Lactococcus lactis subsp. cremoris MG1363]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8QDF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8QDF FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=7N8:4-Borono-L-phenylalanine'>7N8</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8qdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8qdf OCA], [https://pdbe.org/8qdf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8qdf RCSB], [https://www.ebi.ac.uk/pdbsum/8qdf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8qdf ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A2RI36_LACLM A2RI36_LACLM]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Enzymes play an increasingly important role in improving the benignity and efficiency of chemical production, yet the diversity of their applications lags heavily behind chemical catalysts as a result of the relatively narrow range of reaction mechanisms of enzymes. The creation of enzymes containing non-biological functionalities facilitates reaction mechanisms outside nature's canon and paves the way towards fully programmable biocatalysis(1-3). Here we present a completely genetically encoded boronic-acid-containing designer enzyme with organocatalytic reactivity not achievable with natural or engineered biocatalysts(4,5). This boron enzyme catalyses the kinetic resolution of hydroxyketones by oxime formation, in which crucial interactions with the protein scaffold assist in the catalysis. A directed evolution campaign led to a variant with natural-enzyme-like enantioselectivities for several different substrates. The unique activation mode of the boron enzyme was confirmed using X-ray crystallography, high-resolution mass spectrometry (HRMS) and (11)B NMR spectroscopy. Our study demonstrates that genetic-code expansion can be used to create evolvable enantioselective enzymes that rely on xenobiotic catalytic moieties such as boronic acids and access reaction mechanisms not reachable through catalytic promiscuity of natural or engineered enzymes.
-
Authors: Thunnissen, A.M.W.H., Rozeboom, H.J., Longwitz, L., Leveson-Gower, R.B., Roelfes, G.
+
Boron catalysis in a designer enzyme.,Longwitz L, Leveson-Gower RB, Rozeboom HJ, Thunnissen AWH, Roelfes G Nature. 2024 May;629(8013):824-829. doi: 10.1038/s41586-024-07391-3. Epub 2024 , May 8. PMID:38720081<ref>PMID:38720081</ref>
-
Description: Engineered LmrR with Met-89 replaced by para-boronophenylalanine
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Roelfes, G]]
+
<div class="pdbe-citations 8qdf" style="background-color:#fffaf0;"></div>
-
[[Category: Longwitz, L]]
+
== References ==
-
[[Category: Leveson-Gower, R.B]]
+
<references/>
-
[[Category: Rozeboom, H.J]]
+
__TOC__
-
[[Category: Thunnissen, A.M.W.H]]
+
</StructureSection>
 +
[[Category: Lactococcus lactis subsp. cremoris MG1363]]
 +
[[Category: Large Structures]]
 +
[[Category: Leveson-Gower RB]]
 +
[[Category: Longwitz L]]
 +
[[Category: Roelfes G]]
 +
[[Category: Rozeboom HJ]]
 +
[[Category: Thunnissen AMWH]]

Current revision

Engineered LmrR with Met-89 replaced by para-boronophenylalanine

PDB ID 8qdf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools