This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Rhodopsin 3D structures
From Proteopedia
(Difference between revisions)
| (One intermediate revision not shown.) | |||
| Line 7: | Line 7: | ||
*Rhodopsin (Rn) | *Rhodopsin (Rn) | ||
| - | **[[ | + | **[[3cap]], [[5te3]], [[5te5]] – bRn - bovine<br /> |
**[[6ofj]] – bRn – Cryo EM<br /> | **[[6ofj]] – bRn – Cryo EM<br /> | ||
| + | **[[2j4y]], [[4bez]] - bRn (mutant)<br /> | ||
**[[1vqx]], [[1nzs]] – bRn C terminal – NMR<BR /> | **[[1vqx]], [[1nzs]] – bRn C terminal – NMR<BR /> | ||
**[[1edx]] - bRn N terminal – NMR<BR /> | **[[1edx]] - bRn N terminal – NMR<BR /> | ||
**[[1eds]], [[1edv]], [[1edw]] – bRn intradiskal loop – NMR<BR /> | **[[1eds]], [[1edv]], [[1edw]] – bRn intradiskal loop – NMR<BR /> | ||
**[[1fdf]] – bRn helix 7 - NMR<BR /> | **[[1fdf]] – bRn helix 7 - NMR<BR /> | ||
| - | **[[2x72]] – bRn + retinal + guanine nucleotide-binding protein peptide <br /> | ||
**[[3qc9]] – bRn + Mg + ADP<br /> | **[[3qc9]] – bRn + Mg + ADP<br /> | ||
| - | **[[ | + | **[[1f88]], [[1gzm]], [[1hzx]], [[1jfp]], [[1l9h]], [[1u19]], [[2i35]], [[2i36]], [[2i37]], [[2ped]], [[3c9l]], [[3oax]] - bRn + retinal<br /> |
| - | + | ||
**[[7zbc]], [[7zbe]], [[8a6c]], [[8a6d]], [[8a6e]] - bRn + detergents + retinal – cubic phase<br /> | **[[7zbc]], [[7zbe]], [[8a6c]], [[8a6d]], [[8a6e]] - bRn + detergents + retinal – cubic phase<br /> | ||
**[[3cap]], [[5te3]] - bRn <br /> | **[[3cap]], [[5te3]] - bRn <br /> | ||
| + | **[[2j4y]], [[4bez]] - bRn (mutant)<br /> | ||
**[[1jfp]], [[1f88]], [[5te5]] - bRn + retinal<br /> | **[[1jfp]], [[1f88]], [[5te5]] - bRn + retinal<br /> | ||
**[[3c9m]], [[5dys]] - bRn (mutant) + retinal<br /> | **[[3c9m]], [[5dys]] - bRn (mutant) + retinal<br /> | ||
| - | **[[ | + | **[[3aym]], [[3ayn]], [[2z73]], [[2ziy]], [[4ww3]] – Rn + retinal – Flying squid<br /> |
| + | **[[6i9k]] – Rn1 + retinal + lipid – spider<br /> | ||
| + | **[[1xio]] – AnRn - ''Anabaena''<br /> | ||
| + | **[[2m3g]] – AnRn – NMR<br /> | ||
| + | **[[4tl3]] - AnRn (mutant) + retinal<br /> | ||
| + | **[[4hyj]] - Rn + retinal + lipid – ''Exiguobacterium Sibiricum''<br /> | ||
| + | **[[3am6]] – AaRn-2 + cholesterol + retinal – ''Acetabularia acetabulum''<br /> | ||
| + | **[[5awz]], [[5ax0]], [[5ax1]] – AaRn-1 + retinal<br /> | ||
| + | **[[4tl3]] – AaRn-1 (mutant) <br /> | ||
| + | **[[6sqg]] - Rn + retinal + lipid – lake phycodnavirus<br /> | ||
| + | **[[6kfq]] - Rn + retinal + lipid – ''Rubrobacter xylanophilus''<br /> | ||
| + | |||
| + | *Rhodopsin complex with protein | ||
| + | |||
| + | **[[2x72]] – bRn + retinal + guanine nucleotide-binding protein peptide <br /> | ||
**[[3dqb]], [[4a4m]], [[4j4q]] - bRn + guanine nucleotide-binding protein peptide <br /> | **[[3dqb]], [[4a4m]], [[4j4q]] - bRn + guanine nucleotide-binding protein peptide <br /> | ||
**[[4bey]] - bRn (mutant) + guanine nucleotide-binding protein peptide <br /> | **[[4bey]] - bRn (mutant) + guanine nucleotide-binding protein peptide <br /> | ||
| Line 35: | Line 49: | ||
**[[6oy9]] – bRn (mutant) + transducin + GI + retinal – Cryo EM<br /> | **[[6oy9]] – bRn (mutant) + transducin + GI + retinal – Cryo EM<br /> | ||
**[[6qno]], [[6oya]] – bRn (mutant) + transducin + antibody + GI + retinal – Cryo EM<br /> | **[[6qno]], [[6oya]] – bRn (mutant) + transducin + antibody + GI + retinal – Cryo EM<br /> | ||
| - | **[[3aym]], [[3ayn]], [[2z73]], [[2ziy]], [[4ww3]] – Rn + retinal – Flying squid<br /> | ||
| - | **[[6i9k]] – Rn1 + retinal + lipid – spider<br /> | ||
| - | **[[1xio]] – AnRn - ''Anabaena''<br /> | ||
| - | **[[2m3g]] – AnRn – NMR<br /> | ||
| - | **[[4tl3]] - AnRn (mutant) + retinal<br /> | ||
| - | **[[4hyj]] - Rn + retinal + lipid – ''Exiguobacterium Sibiricum''<br /> | ||
| - | **[[3am6]] – AaRn-2 + cholesterol + retinal – ''Acetabularia acetabulum''<br /> | ||
| - | **[[5awz]], [[5ax0]], [[5ax1]] – AaRn-1 + retinal<br /> | ||
| - | **[[4tl3]] – AaRn-1 (mutant) <br /> | ||
| - | **[[6sqg]] - Rn + retinal + lipid – lake phycodnavirus<br /> | ||
| - | **[[6kfq]] - Rn + retinal + lipid – ''Rubrobacter xylanophilus''<br /> | ||
*Sensory rhodopsin II | *Sensory rhodopsin II | ||
Current revision
3D structures of rhodopsin
Updated on 17-October-2023
