Rhodopsin 3D structures

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:57, 28 May 2025) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 7: Line 7:
*Rhodopsin (Rn)
*Rhodopsin (Rn)
-
**[[5te5]], [[5te3]] – bRn - bovine<br />
+
**[[3cap]], [[5te3]], [[5te5]] – bRn - bovine<br />
**[[6ofj]] – bRn – Cryo EM<br />
**[[6ofj]] – bRn – Cryo EM<br />
 +
**[[2j4y]], [[4bez]] - bRn (mutant)<br />
**[[1vqx]], [[1nzs]] – bRn C terminal – NMR<BR />
**[[1vqx]], [[1nzs]] – bRn C terminal – NMR<BR />
**[[1edx]] - bRn N terminal – NMR<BR />
**[[1edx]] - bRn N terminal – NMR<BR />
**[[1eds]], [[1edv]], [[1edw]] – bRn intradiskal loop – NMR<BR />
**[[1eds]], [[1edv]], [[1edw]] – bRn intradiskal loop – NMR<BR />
**[[1fdf]] – bRn helix 7 - NMR<BR />
**[[1fdf]] – bRn helix 7 - NMR<BR />
-
**[[2x72]] – bRn + retinal + guanine nucleotide-binding protein peptide <br />
 
**[[3qc9]] – bRn + Mg + ADP<br />
**[[3qc9]] – bRn + Mg + ADP<br />
-
**[[3oax]], [[3c9l]], [[2ped]], [[2i35]], [[2i36]], [[2i37]], [[1u19]], [[1gzm]], [[1l9h]], [[1hzx]] - bRn + retinal<br />
+
**[[1f88]], [[1gzm]], [[1hzx]], [[1jfp]], [[1l9h]], [[1u19]], [[2i35]], [[2i36]], [[2i37]], [[2ped]], [[3c9l]], [[3oax]] - bRn + retinal<br />
-
**[[6fk6]], [[6fk7]], [[6fk8]], [[6fk9]], [[6fka]], [[6fkb]], [[6fkc]], [[6fkd]], [[5dys]] - bRn (mutant) + detergents + retinal derivative<br />
+
**[[7zbc]], [[7zbe]], [[8a6c]], [[8a6d]], [[8a6e]] - bRn + detergents + retinal – cubic phase<br />
**[[7zbc]], [[7zbe]], [[8a6c]], [[8a6d]], [[8a6e]] - bRn + detergents + retinal – cubic phase<br />
**[[3cap]], [[5te3]] - bRn <br />
**[[3cap]], [[5te3]] - bRn <br />
 +
**[[2j4y]], [[4bez]] - bRn (mutant)<br />
**[[1jfp]], [[1f88]], [[5te5]] - bRn + retinal<br />
**[[1jfp]], [[1f88]], [[5te5]] - bRn + retinal<br />
**[[3c9m]], [[5dys]] - bRn (mutant) + retinal<br />
**[[3c9m]], [[5dys]] - bRn (mutant) + retinal<br />
-
**[[2j4y]], [[4bez]] - bRn (mutant)<br />
+
**[[3aym]], [[3ayn]], [[2z73]], [[2ziy]], [[4ww3]] – Rn + retinal – Flying squid<br />
 +
**[[6i9k]] – Rn1 + retinal + lipid – spider<br />
 +
**[[1xio]] – AnRn - ''Anabaena''<br />
 +
**[[2m3g]] – AnRn – NMR<br />
 +
**[[4tl3]] - AnRn (mutant) + retinal<br />
 +
**[[4hyj]] - Rn + retinal + lipid – ''Exiguobacterium Sibiricum''<br />
 +
**[[3am6]] – AaRn-2 + cholesterol + retinal – ''Acetabularia acetabulum''<br />
 +
**[[5awz]], [[5ax0]], [[5ax1]] – AaRn-1 + retinal<br />
 +
**[[4tl3]] – AaRn-1 (mutant) <br />
 +
**[[6sqg]] - Rn + retinal + lipid – lake phycodnavirus<br />
 +
**[[6kfq]] - Rn + retinal + lipid – ''Rubrobacter xylanophilus''<br />
 +
 
 +
*Rhodopsin complex with protein
 +
 
 +
**[[2x72]] – bRn + retinal + guanine nucleotide-binding protein peptide <br />
**[[3dqb]], [[4a4m]], [[4j4q]] - bRn + guanine nucleotide-binding protein peptide <br />
**[[3dqb]], [[4a4m]], [[4j4q]] - bRn + guanine nucleotide-binding protein peptide <br />
**[[4bey]] - bRn (mutant) + guanine nucleotide-binding protein peptide <br />
**[[4bey]] - bRn (mutant) + guanine nucleotide-binding protein peptide <br />
Line 35: Line 49:
**[[6oy9]] – bRn (mutant) + transducin + GI + retinal – Cryo EM<br />
**[[6oy9]] – bRn (mutant) + transducin + GI + retinal – Cryo EM<br />
**[[6qno]], [[6oya]] – bRn (mutant) + transducin + antibody + GI + retinal – Cryo EM<br />
**[[6qno]], [[6oya]] – bRn (mutant) + transducin + antibody + GI + retinal – Cryo EM<br />
-
**[[3aym]], [[3ayn]], [[2z73]], [[2ziy]], [[4ww3]] – Rn + retinal – Flying squid<br />
 
-
**[[6i9k]] – Rn1 + retinal + lipid – spider<br />
 
-
**[[1xio]] – AnRn - ''Anabaena''<br />
 
-
**[[2m3g]] – AnRn – NMR<br />
 
-
**[[4tl3]] - AnRn (mutant) + retinal<br />
 
-
**[[4hyj]] - Rn + retinal + lipid – ''Exiguobacterium Sibiricum''<br />
 
-
**[[3am6]] – AaRn-2 + cholesterol + retinal – ''Acetabularia acetabulum''<br />
 
-
**[[5awz]], [[5ax0]], [[5ax1]] – AaRn-1 + retinal<br />
 
-
**[[4tl3]] – AaRn-1 (mutant) <br />
 
-
**[[6sqg]] - Rn + retinal + lipid – lake phycodnavirus<br />
 
-
**[[6kfq]] - Rn + retinal + lipid – ''Rubrobacter xylanophilus''<br />
 
*Sensory rhodopsin II
*Sensory rhodopsin II
Line 51: Line 54:
**[[1gu8]], [[1gue]], [[1h68]], [[1jgj]], [[3qap]], [[3qdc]] – NpSRII – ''Natronomonas pharaonis''<br />
**[[1gu8]], [[1gue]], [[1h68]], [[1jgj]], [[3qap]], [[3qdc]] – NpSRII – ''Natronomonas pharaonis''<br />
**[[2ksy]] – NpSRII - NMR<br />
**[[2ksy]] – NpSRII - NMR<br />
-
**[[7pnc]] - NpSRII + retinal<br />
+
**[[9h20]] - NpSRII + retinal<br />
**[[1h2s]], [[2f93]], [[2f95]], [[5jjn]], [[5jjj]], [[5jjf]], [[5jje]] – NpSRII + Rn II transducer<br />
**[[1h2s]], [[2f93]], [[2f95]], [[5jjn]], [[5jjj]], [[5jjf]], [[5jje]] – NpSRII + Rn II transducer<br />
**[[4gyc]] - NpSRII (mutant) + Rn II transducer<br />
**[[4gyc]] - NpSRII (mutant) + Rn II transducer<br />
Line 83: Line 86:
**[[2hpy]] - bLRn + retinal<br />
**[[2hpy]] - bLRn + retinal<br />
-
*Halorhodopsin
+
*Halorhodopsin see [[Bacteriorhodopsin]]
-
**[[1e12]], [[2jaf]], [[5ahy]], [[5ahz]] - HRn + detergents + retinal – ''Halobacterium salinarium''<br />
+
*Archaerhodopsin see [[Bacteriorhodopsin]]
-
**[[2jag]] - HRn (mutant) + detergents + retinal<br />
+
-
**[[3a7k]], [[3abw]], [[3qbg]], [[3qbi]], [[3qbk]], [[3qbl]], [[3vvk]] – NpRn + detergents + retinal<br />
+
-
*Archaerhodopsin
+
*Proteorhodopsin see [[Bacteriorhodopsin]]
-
**[[1uaz]] – HRn-1 + retinal – ''Halobacterium'' <br />
+
*Xanthorhodopsin see [[Bacteriorhodopsin]]
-
**[[1vgo]], [[2z55]], [[3wqj]] - HRn-2 + retinal<br />
+
-
**[[2ei4]] - HRn-2 + retinal + bacterioruberin<br />
+
-
 
+
-
*Proteorhodopsin
+
-
 
+
-
**[[2l6x]] - GpPRn + detergents + retinal – ''Gamma proteobacterium''<br />
+
-
**[[4kly]], [[4knf]] - GpPRn + retinal<br />
+
-
**[[4jq6]] – PRn + retinal + lipid<br />
+
-
 
+
-
*Xanthorhodopsin
+
-
 
+
-
**[[3ddl]] - XRn + detergents + retinal – ''Salinibacter ruber''<br />
+
*Bestrhodopsin (Rn-Rn-bestrophin)
*Bestrhodopsin (Rn-Rn-bestrophin)
Line 109: Line 98:
**[[7pl9]] - Rn + retinal – ''Phaeocystis'' – Cryo EM<br />
**[[7pl9]] - Rn + retinal – ''Phaeocystis'' – Cryo EM<br />
-
*Deltarhodopsin
+
*Deltarhodopsin see [[Bacteriorhodopsin]]
-
 
+
-
**[[4fbz]] - Rn + bacterioruberin + retinal – ''Haloterrigena thermotolerans''<br />
+
*Cyanorhodopsin
*Cyanorhodopsin

Current revision

3D structures of rhodopsin

Updated on 28-May-2025

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Jaime Prilusky, Joel L. Sussman

Retrieved from "http://52.214.119.220/wiki/index.php/Rhodopsin_3D_structures"
Personal tools