This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1o3u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:40, 25 January 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1o3u.gif|left|200px]]
 
-
<!--
+
==Crystal structure of an hepn domain protein (tm0613) from thermotoga maritima at 1.75 A resolution==
-
The line below this paragraph, containing "STRUCTURE_1o3u", creates the "Structure Box" on the page.
+
<StructureSection load='1o3u' size='340' side='right'caption='[[1o3u]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1o3u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O3U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1O3U FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1o3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o3u OCA], [https://pdbe.org/1o3u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1o3u RCSB], [https://www.ebi.ac.uk/pdbsum/1o3u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1o3u ProSAT], [https://www.topsan.org/Proteins/JCSG/1o3u TOPSAN]</span></td></tr>
-
{{STRUCTURE_1o3u| PDB=1o3u | SCENE= }}
+
</table>
-
 
+
== Function ==
-
'''Crystal structure of an HEPN domain protein (TM0613) from Thermotoga maritima at 1.75 A resolution.'''
+
[https://www.uniprot.org/uniprot/Q9WZ82_THEMA Q9WZ82_THEMA]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
1O3U is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O3U OCA].
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o3/1o3u_consurf.spt"</scriptWhenChecked>
-
==Reference==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
Crystal structure of an HEPN domain protein (TM0613) from Thermotoga maritima at 1.75 A resolution., Erlandsen H, Canaves JM, Elsliger MA, von Delft F, Brinen LS, Dai X, Deacon AM, Floyd R, Godzik A, Grittini C, Grzechnik SK, Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Robb A, Quijano K, Schwarzenbacher R, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA, Proteins. 2004 Mar 1;54(4):806-9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14997578 14997578]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1o3u ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
 
-
[[Category: Hypothetical protein]]
 
-
[[Category: Jcsg]]
 
-
[[Category: Joint center for structural genomic]]
 
-
[[Category: Protein structure initiative]]
 
-
[[Category: Psi]]
 
-
[[Category: Structural genomic]]
 
-
[[Category: Tm0613]]
 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 03:21:17 2008''
 

Current revision

Crystal structure of an hepn domain protein (tm0613) from thermotoga maritima at 1.75 A resolution

PDB ID 1o3u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1o3u"
Personal tools