1oig

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[[Image:1oig.gif|left|200px]]
 
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==The solution structure of the DPY module from the Dumpy protein==
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The line below this paragraph, containing "STRUCTURE_1oig", creates the "Structure Box" on the page.
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<StructureSection load='1oig' size='340' side='right'caption='[[1oig]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1oig]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OIG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OIG FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 22 models</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oig FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oig OCA], [https://pdbe.org/1oig PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oig RCSB], [https://www.ebi.ac.uk/pdbsum/1oig PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oig ProSAT]</span></td></tr>
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{{STRUCTURE_1oig| PDB=1oig | SCENE= }}
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</table>
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== Function ==
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'''THE SOLUTION STRUCTURE OF THE DPY MODULE FROM THE DUMPY PROTEIN'''
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[https://www.uniprot.org/uniprot/M9PB30_DROME M9PB30_DROME]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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==Overview==
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BACKGROUND: Growth and morphogenesis during development depend both on patterning genes, which assign positional information, and on genes that regulate mechanical forces. The dumpy gene of the fruit fly Drosophila melanogaster is an example of the latter class, with mutant phenotypes affecting size and shape of the limbs, thoracic cuticle, trachea and mouthparts. RESULTS: The genetically complex dumpy locus was found to span over 100 kb and encode a gigantic 2.5 MDa extracellular matrix protein. Dumpy represents an extreme form of modular protein evolution, containing 308 epidermal growth factor (EGF) modules, interspersed with a new module class, DPY, and terminating in a crosslinking zona pellucida domain and membrane anchor sequence. We determined the three-dimensional structure of the DPY module by nuclear magnetic resonance (NMR) spectroscopy and found that it forms a disulphide-stabilised beta sheet motif, capable of linking end-to-end with EGF modules to form a fibre. Consistent with its cuticle phenotypes, dumpy is expressed at several sites of cuticle-epidermal cell attachment, including the trachea and the muscle tendon cells, which mediate anchorage of the muscles to the cuticle. CONCLUSIONS: The dumpy gene encodes a gigantic extracellular molecule that we predict to be a membrane-anchored fibre of almost a micrometer in length. Insertion and crosslinking of this fibre within the cuticle may provide a strong anchor for the underlying tissue, allowing it to maintain mechanical tension at sites under stress. This would explain its contribution to tissue morphogenesis through its regulation of mechanical properties.
BACKGROUND: Growth and morphogenesis during development depend both on patterning genes, which assign positional information, and on genes that regulate mechanical forces. The dumpy gene of the fruit fly Drosophila melanogaster is an example of the latter class, with mutant phenotypes affecting size and shape of the limbs, thoracic cuticle, trachea and mouthparts. RESULTS: The genetically complex dumpy locus was found to span over 100 kb and encode a gigantic 2.5 MDa extracellular matrix protein. Dumpy represents an extreme form of modular protein evolution, containing 308 epidermal growth factor (EGF) modules, interspersed with a new module class, DPY, and terminating in a crosslinking zona pellucida domain and membrane anchor sequence. We determined the three-dimensional structure of the DPY module by nuclear magnetic resonance (NMR) spectroscopy and found that it forms a disulphide-stabilised beta sheet motif, capable of linking end-to-end with EGF modules to form a fibre. Consistent with its cuticle phenotypes, dumpy is expressed at several sites of cuticle-epidermal cell attachment, including the trachea and the muscle tendon cells, which mediate anchorage of the muscles to the cuticle. CONCLUSIONS: The dumpy gene encodes a gigantic extracellular molecule that we predict to be a membrane-anchored fibre of almost a micrometer in length. Insertion and crosslinking of this fibre within the cuticle may provide a strong anchor for the underlying tissue, allowing it to maintain mechanical tension at sites under stress. This would explain its contribution to tissue morphogenesis through its regulation of mechanical properties.
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==About this Structure==
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Drosophila dumpy is a gigantic extracellular protein required to maintain tension at epidermal-cuticle attachment sites.,Wilkin MB, Becker MN, Mulvey D, Phan I, Chao A, Cooper K, Chung HJ, Campbell ID, Baron M, MacIntyre R Curr Biol. 2000 May 18;10(10):559-67. PMID:10837220<ref>PMID:10837220</ref>
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1OIG is a [[Single protein]] structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OIG OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Drosophila dumpy is a gigantic extracellular protein required to maintain tension at epidermal-cuticle attachment sites., Wilkin MB, Becker MN, Mulvey D, Phan I, Chao A, Cooper K, Chung HJ, Campbell ID, Baron M, MacIntyre R, Curr Biol. 2000 May 18;10(10):559-67. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10837220 10837220]
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</div>
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[[Category: Single protein]]
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<div class="pdbe-citations 1oig" style="background-color:#fffaf0;"></div>
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[[Category: Baron, M.]]
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== References ==
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[[Category: Becker, M N.]]
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<references/>
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[[Category: Campbell, I D.]]
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__TOC__
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[[Category: Chao, A.]]
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</StructureSection>
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[[Category: Chung, H J.]]
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[[Category: Drosophila melanogaster]]
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[[Category: Cooper, K.]]
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[[Category: Large Structures]]
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[[Category: Macintyre, R.]]
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[[Category: Baron M]]
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[[Category: Mulvey, D.]]
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[[Category: Becker MN]]
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[[Category: Phan, I.]]
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[[Category: Campbell ID]]
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[[Category: Wilkin, M B.]]
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[[Category: Chao A]]
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[[Category: Drosophila]]
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[[Category: Chung HJ]]
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[[Category: Dumpy]]
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[[Category: Cooper K]]
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[[Category: Nmr]]
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[[Category: MacIntyre R]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 03:53:09 2008''
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[[Category: Mulvey D]]
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[[Category: Phan I]]
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[[Category: Wilkin MB]]

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The solution structure of the DPY module from the Dumpy protein

PDB ID 1oig

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