8v7u
From Proteopedia
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			| m  (Protected "8v7u" [edit=sysop:move=sysop]) | |||
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| - | '''Unreleased structure''' | ||
| - | + | ==PanDDA analysis -- Crystal Structure of Zika virus NS3 Helicase in complex with Z729726784== | |
| - | + | <StructureSection load='8v7u' size='340' side='right'caption='[[8v7u]], [[Resolution|resolution]] 1.82Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[8v7u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Zika_virus Zika virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8V7U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8V7U FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.82Å</td></tr> | |
| - | [[Category:  | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=YDU:2-cyclopentyl-N-(3-methyl-1,2,4-oxadiazol-5-yl)acetamide'>YDU</scene></td></tr> | 
| - | [[Category:  | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8v7u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8v7u OCA], [https://pdbe.org/8v7u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8v7u RCSB], [https://www.ebi.ac.uk/pdbsum/8v7u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8v7u ProSAT]</span></td></tr> | 
| - | [[Category: Balcomb | + | </table> | 
| - | [[Category:  | + | == Function == | 
| - | [[Category:  | + | [https://www.uniprot.org/uniprot/POLG_ZIKV POLG_ZIKV] Protein C: Encapsulates the genomic RNA.[UniProtKB:P17763]  prM: Acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is matured in the last step of virion assembly, presumably to avoid catastrophic activation of the viral fusion peptide induced by the acidic pH of the trans-Golgi network. After cleavage by host furin, the pr peptide is released in the extracellular medium and small envelope protein M and envelope protein E homodimers are dissociated.[UniProtKB:P17763]  Envelope protein E: Binding to host cell surface receptor is followed by virus internalization through clathrin-mediated endocytosis. Envelope protein E is subsequently involved in membrane fusion between virion and host late endosomes. Synthesized as a homodimer with prM which acts as a chaperone for envelope protein E. After cleavage of prM, envelope protein E dissociate from small envelope protein M and homodimerizes.[UniProtKB:P17763]  Non-structural protein 1: Involved in virus replication and regulation of the innate immune response.[UniProtKB:P17763]  Non-structural protein 2A: May be involved viral RNA replication and capsid assembly.[UniProtKB:P09732]  Non-structural protein 4A: Induces host endoplasmic reticulum membrane rearrangements leading to the formation of virus-induced membranous vesicles hosting the dsRNA and polymerase, functioning as a replication complex. NS4A might also regulate the ATPase activity of the helicase region of Serine protease NS3 chain.[UniProtKB:P17763]  Peptide 2k: Functions as a signal peptide for NS4B and is required for the interferon antagonism activity of the latter.[UniProtKB:P17763]  Non-structural protein 4B: Inhibits interferon (IFN)-induced host STAT1 phosphorylation and nuclear translocation, thereby preventing the establishment of cellular antiviral state by blocking the IFN-alpha/beta pathway.[UniProtKB:P17763] | 
| - | [[Category: Godoy | + | __TOC__ | 
| - | [[Category:  | + | </StructureSection> | 
| - | [[Category:  | + | [[Category: Large Structures]] | 
| - | [[Category:  | + | [[Category: Zika virus]] | 
| - | [[Category:  | + | [[Category: Aschenbrenner JC]] | 
| - | [[Category:  | + | [[Category: Balcomb BH]] | 
| - | [[Category:  | + | [[Category: Fairhead M]] | 
| - | [[Category:  | + | [[Category: Fearon D]] | 
| - | [[Category:  | + | [[Category: Godoy AS]] | 
| - | [[Category:  | + | [[Category: Koekemoer L]] | 
| - | [[Category:  | + | [[Category: Lithgo RM]] | 
| - | [[Category:  | + | [[Category: Marples PG]] | 
| + | [[Category: Mesquita NCMR]] | ||
| + | [[Category: Ni X]] | ||
| + | [[Category: Noske GD]] | ||
| + | [[Category: Oliva G]] | ||
| + | [[Category: Tomlinson CWE]] | ||
| + | [[Category: Walsh MA]] | ||
| + | [[Category: Wild C]] | ||
| + | [[Category: Von Delft F]] | ||
Current revision
PanDDA analysis -- Crystal Structure of Zika virus NS3 Helicase in complex with Z729726784
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Categories: Large Structures | Zika virus | Aschenbrenner JC | Balcomb BH | Fairhead M | Fearon D | Godoy AS | Koekemoer L | Lithgo RM | Marples PG | Mesquita NCMR | Ni X | Noske GD | Oliva G | Tomlinson CWE | Walsh MA | Wild C | Von Delft F
