1p1y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:04, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1p1y.gif|left|200px]]
 
-
<!--
+
==Crystal structure of a continuous three-dimensional DNA lattice from d(GGACAGATGGGAG)==
-
The line below this paragraph, containing "STRUCTURE_1p1y", creates the "Structure Box" on the page.
+
<StructureSection load='1p1y' size='340' side='right'caption='[[1p1y]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1p1y]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P1Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1P1Y FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene>, <scene name='pdbligand=CBR:5-BROMO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
{{STRUCTURE_1p1y| PDB=1p1y | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1p1y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p1y OCA], [https://pdbe.org/1p1y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1p1y RCSB], [https://www.ebi.ac.uk/pdbsum/1p1y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1p1y ProSAT]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of a continuous three-dimensional DNA lattice from d(GGACAGATGGGAG)'''
+
__TOC__
-
 
+
</StructureSection>
-
 
+
[[Category: Large Structures]]
-
==Overview==
+
[[Category: Birktoft JJ]]
-
DNA has proved to be a versatile material for the rational design and assembly of nanometer scale objects. Here we report the crystal structure of a continuous three-dimensional DNA lattice formed by the self-assembly of a DNA 13-mer. The structure consists of stacked layers of parallel helices with adjacent layers linked through parallel-stranded base pairing. The hexagonal lattice geometry contains solvent channels that appear large enough to allow 3'-linked guest molecules into the crystal. We have successfully used these parallel base pairs to design and produce crystals with greatly enlarged solvent channels. This lattice may have applications as a molecular scaffold for structure determination of guest molecules, as a molecular sieve, or in the assembly of molecular electronics. Predictable non-Watson-Crick base pairs, like those described here, may present a new tool in structural DNA nanotechnology.
+
[[Category: Nowakowski J]]
-
 
+
[[Category: Paukstelis PJ]]
-
==About this Structure==
+
[[Category: Seeman NC]]
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P1Y OCA].
+
-
 
+
-
==Reference==
+
-
Crystal structure of a continuous three-dimensional DNA lattice., Paukstelis PJ, Nowakowski J, Birktoft JJ, Seeman NC, Chem Biol. 2004 Aug;11(8):1119-26. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15324813 15324813]
+
-
[[Category: Birktoft, J J.]]
+
-
[[Category: Nowakowski, J.]]
+
-
[[Category: Paukstelis, P J.]]
+
-
[[Category: Seeman, N C.]]
+
-
[[Category: Continuous three-dimensional dna lattice]]
+
-
[[Category: Parallel-stranded base pair]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 04:34:46 2008''
+

Current revision

Crystal structure of a continuous three-dimensional DNA lattice from d(GGACAGATGGGAG)

PDB ID 1p1y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1p1y"
Personal tools