1qyw

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(New page: 200px<br /> <applet load="1qyw" size="450" color="white" frame="true" align="right" spinBox="true" caption="1qyw, resolution 1.63&Aring;" /> '''Crystal structure o...)
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[[Image:1qyw.gif|left|200px]]<br />
 
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<applet load="1qyw" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1qyw, resolution 1.63&Aring;" />
 
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'''Crystal structure of human estrogenic 17beta-hydroxysteroid dehydrogenase comlex with androstanedione and NADP'''<br />
 
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==Overview==
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==Crystal structure of human estrogenic 17beta-hydroxysteroid dehydrogenase complex with androstanedione and NADP==
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Human estrogenic 17beta-hydroxysteroid dehydrogenase (17beta-HSD1), a, member of the short chain dehydrogenase/reductase (SDR) family, is, responsible for the biosynthesis of all active estrogens. The crystal, structures of two C19-steroid ternary complexes, (17beta-HSD1-androstanedione-NADP and 17beta-HSD1-androstenedione-NADP), reveal the critical role of Leu149 in regulating the substrate specificity, and provide novel insight into the different fates of a conserved, glutamate residue in the estrogen-specific proteins upon the binding of, the keto and hydroxyl groups of steroids. The whole NADP molecule can be, unambiguously defined in the NADP binary complex, whereas both ternary, complexes show that the nicotinamide moiety of NADP cannot be located in, the density maps. In both ternary complexes, the expected position of, carboxamide oxygen of NADP is occupied by a water molecule, which makes a, bifurcated hydrogen bond with the O3 of C19-steroid and the main chain, nitrogen of Val188. These results demonstrate that the hydrogen bonding, interaction between the main chain amide group and the carboxamide group, of NAD(P)(H) plays an important role in anchoring the nicotinamide ring to, the enzyme. This finding is substantiated by structural analyses of all 33, NAD(P)(H) complexes of different SDR proteins, because 29 structures of 33, show this interaction. This common feature reveals a general mechanism, among the SDR family, providing a rational basis for inhibitor design, against biologically relevant SDR targets.
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<StructureSection load='1qyw' size='340' side='right'caption='[[1qyw]], [[Resolution|resolution]] 1.63&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1qyw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QYW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QYW FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.63&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5SD:5ALPHA-ANDROSTAN-3,17-DIONE'>5SD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qyw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qyw OCA], [https://pdbe.org/1qyw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qyw RCSB], [https://www.ebi.ac.uk/pdbsum/1qyw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qyw ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DHB1_HUMAN DHB1_HUMAN] Favors the reduction of estrogens and androgens. Also has 20-alpha-HSD activity. Uses preferentially NADH.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qy/1qyw_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qyw ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Human estrogenic 17beta-hydroxysteroid dehydrogenase (17beta-HSD1), a member of the short chain dehydrogenase/reductase (SDR) family, is responsible for the biosynthesis of all active estrogens. The crystal structures of two C19-steroid ternary complexes (17beta-HSD1-androstanedione-NADP and 17beta-HSD1-androstenedione-NADP) reveal the critical role of Leu149 in regulating the substrate specificity and provide novel insight into the different fates of a conserved glutamate residue in the estrogen-specific proteins upon the binding of the keto and hydroxyl groups of steroids. The whole NADP molecule can be unambiguously defined in the NADP binary complex, whereas both ternary complexes show that the nicotinamide moiety of NADP cannot be located in the density maps. In both ternary complexes, the expected position of carboxamide oxygen of NADP is occupied by a water molecule, which makes a bifurcated hydrogen bond with the O3 of C19-steroid and the main chain nitrogen of Val188. These results demonstrate that the hydrogen bonding interaction between the main chain amide group and the carboxamide group of NAD(P)(H) plays an important role in anchoring the nicotinamide ring to the enzyme. This finding is substantiated by structural analyses of all 33 NAD(P)(H) complexes of different SDR proteins, because 29 structures of 33 show this interaction. This common feature reveals a general mechanism among the SDR family, providing a rational basis for inhibitor design against biologically relevant SDR targets.
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==About this Structure==
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Cofactor hydrogen bonding onto the protein main chain is conserved in the short chain dehydrogenase/reductase family and contributes to nicotinamide orientation.,Shi R, Lin SX J Biol Chem. 2004 Apr 16;279(16):16778-85. Epub 2004 Feb 13. PMID:14966133<ref>PMID:14966133</ref>
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1QYW is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with 5SD, NAP and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Estradiol_17-beta-dehydrogenase Estradiol 17-beta-dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.62 1.1.1.62] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1QYW OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Cofactor hydrogen bonding onto the protein main chain is conserved in the short chain dehydrogenase/reductase family and contributes to nicotinamide orientation., Shi R, Lin SX, J Biol Chem. 2004 Apr 16;279(16):16778-85. Epub 2004 Feb 13. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=14966133 14966133]
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</div>
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[[Category: Estradiol 17-beta-dehydrogenase]]
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<div class="pdbe-citations 1qyw" style="background-color:#fffaf0;"></div>
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[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Lin, S.X.]]
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[[Category: Shi, R.]]
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[[Category: 5SD]]
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[[Category: GOL]]
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[[Category: NAP]]
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[[Category: 17bhsd1]]
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[[Category: androstanedione]]
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[[Category: c19-steroid]]
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[[Category: nadp]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 18:57:35 2007''
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==See Also==
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*[[Hydroxysteroid dehydrogenase 3D structures|Hydroxysteroid dehydrogenase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Lin SX]]
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[[Category: Shi R]]

Current revision

Crystal structure of human estrogenic 17beta-hydroxysteroid dehydrogenase complex with androstanedione and NADP

PDB ID 1qyw

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