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== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
- | Nanobodies are single-domain fragments of antibodies with comparable specificity and affinity to antibodies. They are emerging as versatile tools in biology due to their relatively small size. Here, we report the crystal structure of a specific nanobody Nbalpha-syn01, bound to a 14 amino acid long peptide of alpha-synuclein (alphaSyn), a 140-residue protein whose aggregation is associated with Parkinson's disease. The complex structure exhibits a unique binding pattern where the alphaSyn peptide replaces the N-terminal region of nanobody. Recognition is mediated principally by extended main chain interaction of the alphaSyn peptide and specificity of the interaction lies in the central 48-52 region of alphaSyn peptide. Structure-guided truncation of Nbalpha-syn01 shows tighter binding to alphaSyn peptide and improved inhibition of alpha-synuclein aggregation. The structure of the truncated complex was subsequently determined and was indistinguishable to full length complex as the full-length form had no visible electron density for the N-terminal end. These findings reveal the molecular basis for a previously unobserved binding mode for nanobody recognition of alpha-synuclein, providing an explanation for the enhanced binding, and potential for an alternate framework for structure-based protein engineering of nanobodies to develop better diagnostic and therapeutic tools | + | Nanobodies are single-domain fragments of antibodies with comparable specificity and affinity to antibodies. They are emerging as versatile tools in biology due to their relatively small size. Here, we report the crystal structure of a specific nanobody Nbalpha-syn01, bound to a 14 amino acid long peptide of alpha-synuclein (alphaSyn), a 140-residue protein whose aggregation is associated with Parkinson's disease. The complex structure exhibits a unique binding pattern where the alphaSyn peptide replaces the N-terminal region of nanobody. Recognition is mediated principally by extended main chain interaction of the alphaSyn peptide and specificity of the interaction lies in the central 48-52 region of alphaSyn peptide. Structure-guided truncation of Nbalpha-syn01 shows tighter binding to alphaSyn peptide and improved inhibition of alpha-synuclein aggregation. The structure of the truncated complex was subsequently determined and was indistinguishable to full length complex as the full-length form had no visible electron density for the N-terminal end. These findings reveal the molecular basis for a previously unobserved binding mode for nanobody recognition of alpha-synuclein, providing an explanation for the enhanced binding, and potential for an alternate framework for structure-based protein engineering of nanobodies to develop better diagnostic and therapeutic tools. |
- | Structural insights into the unique recognition module between alpha-synuclein peptide and nanobody.,Islam Z, Vaikath NN, Hmila I, El-Agnaf OMA, Kolatkar PR Protein Sci. | + | Structural insights into the unique recognition module between alpha-synuclein peptide and nanobody.,Islam Z, Vaikath NN, Hmila I, El-Agnaf OMA, Kolatkar PR Protein Sci. 2024 Feb;33(2):e4875. doi: 10.1002/pro.4875. PMID:38105512<ref>PMID:38105512</ref> |
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
Current revision
Structure of nanobody in complex with alpha-synuclein peptide
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