6yi9

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Current revision (08:30, 17 October 2024) (edit) (undo)
 
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<StructureSection load='6yi9' size='340' side='right'caption='[[6yi9]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
<StructureSection load='6yi9' size='340' side='right'caption='[[6yi9]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6yi9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YI9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YI9 FirstGlance]. <br>
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YI9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YI9 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ALY:N(6)-ACETYLLYSINE'>ALY</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ALY:N(6)-ACETYLLYSINE'>ALY</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yi9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yi9 OCA], [https://pdbe.org/6yi9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yi9 RCSB], [https://www.ebi.ac.uk/pdbsum/6yi9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yi9 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yi9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yi9 OCA], [https://pdbe.org/6yi9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yi9 RCSB], [https://www.ebi.ac.uk/pdbsum/6yi9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yi9 ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
 
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[https://www.uniprot.org/uniprot/PCKGC_RAT PCKGC_RAT] Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle.
 
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Acetylation is known to regulate the activity of cytosolic phosphoenolpyruvate carboxykinase (PCK1), a key enzyme in gluconeogenesis, by promoting the reverse reaction of the enzyme (converting phosphoenolpyruvate to oxaloacetate). It is also known that the histone acetyltransferase p300 can induce PCK1 acetylation in cells, but whether that is a direct or indirect function was not known. Here we initially set out to determine whether p300 can acetylate directly PCK1 in vitro. We report that p300 weakly acetylates PCK1, but surprisingly, using several techniques including protein crystallization, mass spectrometry, isothermal titration calorimetry (ITC), saturation-transfer difference nuclear magnetic resonance (STD-NMR) and molecular docking, we found that PCK1 is also able to acetylate itself using acetyl-CoA independently of p300. This reaction yielded an acetylated recombinant PCK1 with a 3-fold decrease in kcat without changes in Km for all substrates. Acetylation stoichiometry was determined for 14 residues, including residues lining the active site. Structural and kinetic analyses determined that site-directed acetylation of K244, located inside the active site, altered this site and rendered the enzyme inactive. Additionally, we found that acetyl-CoA binding to the active site is specific and metal dependent. Our findings provide direct evidence for acetyl-CoA binding and chemically reacting with the active site of PCK1 and suggest a newly discovered regulatory mechanism of PCK1 during metabolic stress.
 
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Self-acetylation at the active site of phosphoenolpyruvate carboxykinase (PCK1) controls enzyme activity.,Latorre-Muro P, Baeza J, Hurtado-Guerrero R, Hicks T, Delso I, Hernandez-Ruiz C, Velazquez-Campoy A, Lawton AJ, Angulo J, Denu JM, Carrodeguas JA J Biol Chem. 2020 Dec 17. pii: RA120.015103. doi: 10.1074/jbc.RA120.015103. PMID:33334880<ref>PMID:33334880</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 6yi9" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Phosphoenolpyruvate carboxykinase 3D structures|Phosphoenolpyruvate carboxykinase 3D structures]]
*[[Phosphoenolpyruvate carboxykinase 3D structures|Phosphoenolpyruvate carboxykinase 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Rattus norvegicus]]
 
[[Category: Angulo J]]
[[Category: Angulo J]]
[[Category: Baeza J]]
[[Category: Baeza J]]

Current revision

Crystal structure of the rat cytosolic PCK1, acetylated on Lys244

PDB ID 6yi9

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