Template:STRUCTURE 1puf

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m (Protected "Template:STRUCTURE 1puf" [edit=sysop:move=sysop])
Current revision (10:33, 11 March 2013) (edit) (undo)
 
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{{Structure
{{Structure
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|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1puf, resolution 1.90&Aring; (<scene name='initialview01'>initial scene</scene>)
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|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1puf]], [[Resolution|resolution]] 1.90&Aring; (<scene name='initialview01'>default scene</scene>)}}}
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|SITE=
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|LIGAND= <scene name='pdbligand=DA:2&#39;-DEOXYADENOSINE-5&#39;-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2&#39;-DEOXYCYTIDINE-5&#39;-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2&#39;-DEOXYGUANOSINE-5&#39;-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5&#39;-MONOPHOSPHATE'>DT</scene>
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|ACTIVITY=
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|GENE= HOXA9 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus]), PBX1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
|GENE= HOXA9 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus]), PBX1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086 homeodomain]</span>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1puf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1puf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1puf RCSB], [http://www.ebi.ac.uk/pdbsum/1puf PDBsum]</span>
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|RELATEDENTRY=
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|FUNCTION={{GO|id=GO:0003677 | text = DNA binding}}{{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0016563 | text = transcription activator activity}}{{GO|id=GO:0003700 | text = transcription factor activity}}{{GO|id=GO:0043565 | text = sequence-specific DNA binding}}
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1puf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1puf OCA], [http://www.ebi.ac.uk/pdbsum/1puf PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1puf RCSB]</span>
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|PROCESS={{GO|id=GO:0006355 | text = regulation of transcription, DNA-dependent}}{{GO|id=GO:0007275 | text = multicellular organismal development}}{{GO|id=GO:0006350 | text = transcription}}{{GO|id=GO:0045449 | text = regulation of transcription}}{{GO|id=GO:0006700 | text = C21-steroid hormone biosynthetic process}}{{GO|id=GO:0045898 | text = regulation of transcriptional preinitiation complex assembly}}{{GO|id=GO:0009790 | text = embryonic development}}{{GO|id=GO:0006366 | text = transcription from RNA polymerase II promoter}}{{GO|id=GO:0030154 | text = cell differentiation}}{{GO|id=GO:0030902 | text = hindbrain development}}{{GO|id=GO:0007548 | text = sex differentiation}}
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|COMPONENT={{GO|id=GO:0005634 | text = nucleus}}{{GO|id=GO:0005737 | text = cytoplasm}}
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|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1pufA00 1Pufa00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1pufB00 1Pufb00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000047 Ipr000047], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001356 Ipr001356], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012287 Ipr012287], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009057 Ipr009057], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006711 Ipr006711], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR005542 Ipr005542]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00046 PF00046]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=95131 d1pufa_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=95132 d1pufb_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P09631 P09631], [http://ca.expasy.org/cgi-bin/niceprot.pl?P40424 P40424]</span>
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|uPDB=1PUF|CONSURF={{!}}-
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{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
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{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
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{{!}} '''Toggle Conservation Colors:'''
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{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
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Rows = identical sequences:
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<jmol>
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<jmolButton>
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<script></script>
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<text>A [x]</text>
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<name>jmb_1puf_A</name>
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<title>toggle chain A</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
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<script></script>
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<text>B [x]</text>
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<name>jmb_1puf_B</name>
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<title>toggle chain B</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
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<script></script>
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<text>C [x]</text>
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<name>jmb_1puf_C</name>
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<title>toggle chain C</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
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<script></script>
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<text>D [x]</text>
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<name>jmb_1puf_D</name>
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<title>toggle chain D</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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}}
}}

Current revision

Drag the structure with the mouse to rotate
1puf, resolution 1.90Å ()
Gene: HOXA9 (Mus musculus), PBX1 (Homo sapiens)
Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml


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OCA

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