8vrx
From Proteopedia
(Difference between revisions)
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==Bile salt hydrolase from Arthrobacter citreus== | ==Bile salt hydrolase from Arthrobacter citreus== | ||
| - | <StructureSection load='8vrx' size='340' side='right'caption='[[8vrx]]' scene=''> | + | <StructureSection load='8vrx' size='340' side='right'caption='[[8vrx]], [[Resolution|resolution]] 2.04Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'> | + | <table><tr><td colspan='2'>[[8vrx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arthrobacter_citreus Arthrobacter citreus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8VRX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8VRX FirstGlance]. <br> |
| - | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.04Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8vrx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8vrx OCA], [https://pdbe.org/8vrx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8vrx RCSB], [https://www.ebi.ac.uk/pdbsum/8vrx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8vrx ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8vrx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8vrx OCA], [https://pdbe.org/8vrx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8vrx RCSB], [https://www.ebi.ac.uk/pdbsum/8vrx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8vrx ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A0AAN0NPC4_9MICC A0AAN0NPC4_9MICC] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The bile salt hydrolases (BSHs) are significant constituents of animal microbiomes. An evolving appreciation of their roles in health and disease has established them as targets of pharmacological inhibition. These bacterial enzymes belong to the N-terminal nucleophile superfamily and are best known to catalyze the deconjugation of glycine or taurine from bile salts to release bile acid substrates for transformation and or metabolism in the gastrointestinal tract. Here, we identify and describe the BSH from a common member of the Plains bison microbiome, Arthrobacter citreus (BSH(Ac)). Steady-state kinetic analyses demonstrated that BSH(Ac) is a broad-spectrum hydrolase with a preference for glycine-conjugates and deoxycholic acid (DCA). Second-order rate constants (k(cat)/K(M)) for BSH(Ac)-catalyzed reactions of relevant bile salts-glyco- and tauro-conjugates of cholic acid and DCA- varied by approximately 30-fold and measured between 1.4 x 10(5) and 4.3 x 10(6) M(-1)s(-1). Interestingly, a pan-BSH inhibitor named AAA-10 acted as a slow irreversible inhibitor of BSH(Ac) with a rate of inactivation (k(inact)) of approximately 2 h(-1) and a second order rate constant (k(inact)/K(I)) of approximately 24 M(-1)s(-1) for the process. Structural characterization of BSH(Ac) reacted with AAA-10 showed covalent modification of the N-terminal cysteine nucleophile, providing molecular details for an enzyme-stabilized product formed from this mechanism-based inhibitor's alpha-fluoromethyl ketone warhead. Structural comparison of the BSHs and BSH:inhibitor complexes highlighted the plasticity of the steroid-binding site, including a flexible loop that is variable across well-studied BSHs. | ||
| + | |||
| + | Structural and functional analysis of a bile salt hydrolase from the bison microbiome.,Asar R, Dhindwal P, Ruzzini A J Biol Chem. 2024 Oct;300(10):107769. doi: 10.1016/j.jbc.2024.107769. Epub 2024 , Sep 12. PMID:39276930<ref>PMID:39276930</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 8vrx" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Arthrobacter citreus]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: | + | [[Category: Dhindwal P]] |
| + | [[Category: Ruzzini A]] | ||
Current revision
Bile salt hydrolase from Arthrobacter citreus
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