1s3u

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(New page: 200px<br /> <applet load="1s3u" size="450" color="white" frame="true" align="right" spinBox="true" caption="1s3u, resolution 2.5&Aring;" /> '''Structure Determinat...)
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[[Image:1s3u.gif|left|200px]]<br />
 
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<applet load="1s3u" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1s3u, resolution 2.5&Aring;" />
 
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'''Structure Determination of Tetrahydroquinazoline Antifolates in Complex with Human and Pneumocystis carinii Dihydrofolate Reductase: Correlations of Enzyme Selectivity and Stereochemistry'''<br />
 
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==Overview==
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==Structure Determination of Tetrahydroquinazoline Antifolates in Complex with Human and Pneumocystis carinii Dihydrofolate Reductase: Correlations of Enzyme Selectivity and Stereochemistry==
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Structural data are reported for the first examples of the, tetrahydroquinazoline antifolate, (6R,6S)-2,4-diamino-6-(1-indolinomethyl)-5,6,7,8-tetrahydroquinazoline (1), and its trimethoxy analogue, (6R,6S)-2,4-diamino-6-(3',4',5'-trimethoxybenzyl)-5,6,7,8-tetrahydroquinaz, oline (2) as inhibitor complexes with dihydrofolate reductase (DHFR) from, human (hDHFR) and Pneumocystis carinii (pcDHFR) sources. The indoline, analogue (1) was crystallized as ternary complexes with NADPH and hDHFR, (1.9 A resolution) and pcDHFR (2.3 A resolution), while the trimethoxy, quinazoline analogue (2) was crystallized as a binary complex with hDHFR, in two polymorphic rhombohedral R3 lattices: R3(1) to 1.8 A resolution and, R3(2) to 2.0 A resolution. Structural analysis of these potent and, selective DHFR-inhibitor complexes revealed preferential binding of the, 6S-equatorial isomer in each structure. This configuration is similar to, that of the natural tetrahydrofolate substrate; that is, 6S. These data, also show that in both the hDHFR and pcDHFR ternary complexes with (1) the, indoline ring is partially disordered, with two static conformations that, differ between structures. These conformers also differ from that observed, for the trimethoxybenzyl ring of tetrahydroquinazoline (2). There is also, a correlation between the disorder of the flexible loop 23 and the, disorder of the cofactor nicotinamide ribose ring in the pcDHFR-NADPH-(1), ternary complex. Comparison of the Toxoplasma gondii DHFR (tgDHFR), sequence with those of other DHFRs provides insight into the role of, sequence and conformation in inhibitor-binding preferences which may aid, in the design of novel antifolates with specific DHFR selectivity.
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<StructureSection load='1s3u' size='340' side='right'caption='[[1s3u]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1s3u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S3U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1S3U FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TQD:(2R,6S)-6-{[METHYL(3,4,5-TRIMETHOXYPHENYL)AMINO]METHYL}-1,2,5,6,7,8-HEXAHYDROQUINAZOLINE-2,4-DIAMINE'>TQD</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1s3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s3u OCA], [https://pdbe.org/1s3u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1s3u RCSB], [https://www.ebi.ac.uk/pdbsum/1s3u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1s3u ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/DYR_HUMAN DYR_HUMAN] Defects in DHFR are the cause of megaloblastic anemia due to dihydrofolate reductase deficiency (DHFRD) [MIM:[https://omim.org/entry/613839 613839]. DHFRD is an inborn error of metabolism, characterized by megaloblastic anemia and/or pancytopenia, severe cerebral folate deficiency, and cerebral tetrahydrobiopterin deficiency. Clinical features include variable neurologic symptoms, ranging from severe developmental delay and generalized seizures in infancy, to childhood absence epilepsy with learning difficulties, to lack of symptoms.<ref>PMID:21310276</ref> <ref>PMID:21310277</ref>
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== Function ==
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[https://www.uniprot.org/uniprot/DYR_HUMAN DYR_HUMAN] Key enzyme in folate metabolism. Contributes to the de novo mitochondrial thymidylate biosynthesis pathway. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. Binds its own mRNA and that of DHFRL1.<ref>PMID:21876188</ref> <ref>PMID:12096917</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/s3/1s3u_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1s3u ConSurf].
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<div style="clear:both"></div>
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==Disease==
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==See Also==
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Known disease associated with this structure: Anemia, megaloblastic, due to DHFR deficiency (1) OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=126060 126060]]
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*[[Dihydrofolate reductase 3D structures|Dihydrofolate reductase 3D structures]]
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== References ==
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==About this Structure==
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<references/>
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1S3U is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with SO4 and TQD as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Dihydrofolate_reductase Dihydrofolate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.1.3 1.5.1.3] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1S3U OCA].
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__TOC__
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</StructureSection>
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==Reference==
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Structure determination of tetrahydroquinazoline antifolates in complex with human and Pneumocystis carinii dihydrofolate reductase: correlations between enzyme selectivity and stereochemistry., Cody V, Luft JR, Pangborn W, Gangjee A, Queener SF, Acta Crystallogr D Biol Crystallogr. 2004 Apr;60(Pt 4):646-55. Epub 2004, Mar 23. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15039552 15039552]
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[[Category: Dihydrofolate reductase]]
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Cody, V.]]
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[[Category: Cody V]]
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[[Category: Gangjee, A.]]
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[[Category: Gangjee A]]
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[[Category: Luft, J.R.]]
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[[Category: Luft JR]]
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[[Category: Pangborn, W.]]
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[[Category: Pangborn W]]
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[[Category: Queener, S.F.]]
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[[Category: Queener SF]]
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[[Category: SO4]]
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[[Category: TQD]]
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[[Category: dihydrofolate reductase]]
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[[Category: inhibitor complex]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 19:10:14 2007''
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Current revision

Structure Determination of Tetrahydroquinazoline Antifolates in Complex with Human and Pneumocystis carinii Dihydrofolate Reductase: Correlations of Enzyme Selectivity and Stereochemistry

PDB ID 1s3u

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