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1sn6

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(New page: 200px<br /> <applet load="1sn6" size="450" color="white" frame="true" align="right" spinBox="true" caption="1sn6" /> '''NMR solution structure of human Saposin C i...)
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[[Image:1sn6.gif|left|200px]]<br />
 
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<applet load="1sn6" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1sn6" />
 
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'''NMR solution structure of human Saposin C in SDS micelles'''<br />
 
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==Overview==
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==NMR solution structure of human Saposin C in SDS micelles==
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Saposin C is a lysosomal, membrane-binding protein that acts as an, activator for the hydrolysis of glucosylceramide by the enzyme, glucocerebrosidase. We used high-resolution NMR to determine the, three-dimensional solution structure of saposin C in the presence of the, detergent sodium dodecyl sulfate (SDS). This structure provides the first, representation of membrane bound saposin C at the atomic level. In the, presence of SDS, the protein adopts an open conformation with an exposed, hydrophobic pocket. In contrast, the previously reported NMR structure of, saposin C in the absence of SDS is compact and contains a hydrophobic core, that is not exposed to the solvent. NMR data indicate that the SDS, molecules interact with the hydrophobic pocket. The structure of saposin C, in the presence of SDS is very similar to a monomer in the saposin B, homodimer structure. Their comparison reveals possible similarity in the, type of protein/lipid interaction as well as structural components, differentiating their quaternary structures and functional specificity.
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<StructureSection load='1sn6' size='340' side='right'caption='[[1sn6]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1sn6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SN6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SN6 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sn6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sn6 OCA], [https://pdbe.org/1sn6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sn6 RCSB], [https://www.ebi.ac.uk/pdbsum/1sn6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sn6 ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/SAP_HUMAN SAP_HUMAN] Defects in PSAP are the cause of combined saposin deficiency (CSAPD) [MIM:[https://omim.org/entry/611721 611721]; also known as prosaposin deficiency. CSAPD is due to absence of all saposins, leading to a fatal storage disorder with hepatosplenomegaly and severe neurological involvement.<ref>PMID:1371116</ref> <ref>PMID:11309366</ref> Defects in PSAP saposin-B region are the cause of leukodystrophy metachromatic due to saposin-B deficiency (MLD-SAPB) [MIM:[https://omim.org/entry/249900 249900]. MLD-SAPB is an atypical form of metachromatic leukodystrophy. It is characterized by tissue accumulation of cerebroside-3-sulfate, demyelination, periventricular white matter abnormalities, peripheral neuropathy. Additional neurological features include dysarthria, ataxic gait, psychomotr regression, seizures, cognitive decline and spastic quadriparesis. Defects in PSAP saposin-C region are the cause of atypical Gaucher disease (AGD) [MIM:[https://omim.org/entry/610539 610539]. Affected individuals have marked glucosylceramide accumulation in the spleen without having a deficiency of glucosylceramide-beta glucosidase characteristic of classic Gaucher disease, a lysosomal storage disorder.<ref>PMID:2060627</ref> <ref>PMID:17919309</ref> Defects in PSAP saposin-A region are the cause of atypical Krabbe disease (AKRD) [MIM:[https://omim.org/entry/611722 611722]. AKRD is a disorder of galactosylceramide metabolism. AKRD features include progressive encephalopathy and abnormal myelination in the cerebral white matter resembling Krabbe disease.<ref>PMID:15773042</ref> Note=Defects in PSAP saposin-D region are found in a variant of Tay-Sachs disease (GM2-gangliosidosis).
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== Function ==
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[https://www.uniprot.org/uniprot/SAP_HUMAN SAP_HUMAN] The lysosomal degradation of sphingolipids takes place by the sequential action of specific hydrolases. Some of these enzymes require specific low-molecular mass, non-enzymic proteins: the sphingolipids activator proteins (coproteins). Saposin-A and saposin-C stimulate the hydrolysis of glucosylceramide by beta-glucosylceramidase (EC 3.2.1.45) and galactosylceramide by beta-galactosylceramidase (EC 3.2.1.46). Saposin-C apparently acts by combining with the enzyme and acidic lipid to form an activated complex, rather than by solubilizing the substrate. Saposin-B stimulates the hydrolysis of galacto-cerebroside sulfate by arylsulfatase A (EC 3.1.6.8), GM1 gangliosides by beta-galactosidase (EC 3.2.1.23) and globotriaosylceramide by alpha-galactosidase A (EC 3.2.1.22). Saposin-B forms a solubilizing complex with the substrates of the sphingolipid hydrolases. Saposin-D is a specific sphingomyelin phosphodiesterase activator (EC 3.1.4.12).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sn/1sn6_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sn6 ConSurf].
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<div style="clear:both"></div>
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==Disease==
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==See Also==
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Known diseases associated with this structure: Combined SAP deficiency OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=176801 176801]], Gaucher disease, atypical OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=176801 176801]], Metachromatic leukodystrophy due to deficiency of SAP-1 OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=176801 176801]]
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*[[Saposin|Saposin]]
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== References ==
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==About this Structure==
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<references/>
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1SN6 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1SN6 OCA].
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__TOC__
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</StructureSection>
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==Reference==
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Solution structure of human saposin C in a detergent environment., Hawkins CA, de Alba E, Tjandra N, J Mol Biol. 2005 Mar 11;346(5):1381-92. Epub 2005 Jan 20. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15713488 15713488]
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Alba, E.de.]]
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[[Category: Hawkins CA]]
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[[Category: Hawkins, C.A.]]
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[[Category: Tjandra N]]
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[[Category: Tjandra, N.]]
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[[Category: De Alba E]]
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[[Category: 3 disulfide bridges]]
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[[Category: all alpha-helices]]
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[[Category: alpha-helices connected by turns]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 19:15:38 2007''
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Current revision

NMR solution structure of human Saposin C in SDS micelles

PDB ID 1sn6

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