1t7x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /> <applet load="1t7x" size="450" color="white" frame="true" align="right" spinBox="true" caption="1t7x, resolution 3.10&Aring;" /> '''Zn-alpha-2-glycopro...)
Current revision (07:27, 30 October 2024) (edit) (undo)
 
(17 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1t7x.gif|left|200px]]<br />
 
-
<applet load="1t7x" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1t7x, resolution 3.10&Aring;" />
 
-
'''Zn-alpha-2-glycoprotein; refolded CHO-ZAG PEG 400'''<br />
 
-
==Overview==
+
==Zn-alpha-2-glycoprotein; refolded CHO-ZAG PEG 400==
-
Zn-alpha2-glycoprotein (ZAG) is a 41 kDa soluble protein that is present, in most bodily fluids. The previously reported 2.8 A crystal structure of, ZAG isolated from human serum demonstrated the structural similarity, between ZAG and class I major histocompatibility complex (MHC) molecules, and revealed a non-peptidic ligand in the ZAG counterpart of the MHC, peptide-binding groove. Here we present crystallographic studies to, explore further the nature of the non-peptidic ligand in the ZAG groove., Comparison of the structures of several forms of recombinant ZAG, including a 1.95 A structure derived from ZAG expressed in insect cells, suggests that the non-peptidic ligand in the current structures and in the, structure of serum ZAG is a polyethylene glycol (PEG), which is present in, the crystallization conditions used. Further support for PEG binding in, the ZAG groove is provided by the finding that PEG displaces a, fluorophore-tagged fatty acid from the ZAG binding site. From these, results we hypothesize that our purified forms of ZAG do not contain a, bound endogenous ligand, but that the ZAG groove is capable of binding, hydrophobic molecules, which may relate to its function.
+
<StructureSection load='1t7x' size='340' side='right'caption='[[1t7x]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1t7x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T7X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T7X FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t7x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t7x OCA], [https://pdbe.org/1t7x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t7x RCSB], [https://www.ebi.ac.uk/pdbsum/1t7x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t7x ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ZA2G_HUMAN ZA2G_HUMAN] Stimulates lipid degradation in adipocytes and causes the extensive fat losses associated with some advanced cancers. May bind polyunsaturated fatty acids.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t7/1t7x_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t7x ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Zn-alpha2-glycoprotein (ZAG) is a 41 kDa soluble protein that is present in most bodily fluids. The previously reported 2.8 A crystal structure of ZAG isolated from human serum demonstrated the structural similarity between ZAG and class I major histocompatibility complex (MHC) molecules and revealed a non-peptidic ligand in the ZAG counterpart of the MHC peptide-binding groove. Here we present crystallographic studies to explore further the nature of the non-peptidic ligand in the ZAG groove. Comparison of the structures of several forms of recombinant ZAG, including a 1.95 A structure derived from ZAG expressed in insect cells, suggests that the non-peptidic ligand in the current structures and in the structure of serum ZAG is a polyethylene glycol (PEG), which is present in the crystallization conditions used. Further support for PEG binding in the ZAG groove is provided by the finding that PEG displaces a fluorophore-tagged fatty acid from the ZAG binding site. From these results we hypothesize that our purified forms of ZAG do not contain a bound endogenous ligand, but that the ZAG groove is capable of binding hydrophobic molecules, which may relate to its function.
-
==About this Structure==
+
Crystallographic studies of ligand binding by Zn-alpha2-glycoprotein.,Delker SL, West AP Jr, McDermott L, Kennedy MW, Bjorkman PJ J Struct Biol. 2004 Nov;148(2):205-13. PMID:15477100<ref>PMID:15477100</ref>
-
1T7X is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with NAG as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1T7X OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Crystallographic studies of ligand binding by Zn-alpha2-glycoprotein., Delker SL, West AP Jr, McDermott L, Kennedy MW, Bjorkman PJ, J Struct Biol. 2004 Nov;148(2):205-13. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15477100 15477100]
+
</div>
 +
<div class="pdbe-citations 1t7x" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Bjorkman, P.J.]]
+
[[Category: Bjorkman PJ]]
-
[[Category: Delker, S.L.]]
+
[[Category: Delker SL]]
-
[[Category: Jr., A.P.West.]]
+
[[Category: Kennedy MW]]
-
[[Category: Kennedy, M.W.]]
+
[[Category: McDermott L]]
-
[[Category: McDermott, L.]]
+
[[Category: West Jr AP]]
-
[[Category: NAG]]
+
-
[[Category: mhc class i homolog]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 19:21:42 2007''
+

Current revision

Zn-alpha-2-glycoprotein; refolded CHO-ZAG PEG 400

PDB ID 1t7x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools