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1tdi

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(New page: 200px<br /> <applet load="1tdi" size="450" color="white" frame="true" align="right" spinBox="true" caption="1tdi, resolution 2.40&Aring;" /> '''Crystal Structure o...)
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[[Image:1tdi.gif|left|200px]]<br />
 
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<applet load="1tdi" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1tdi, resolution 2.40&Aring;" />
 
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'''Crystal Structure of hGSTA3-3 in Complex with Glutathione'''<br />
 
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==Overview==
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==Crystal Structure of hGSTA3-3 in Complex with Glutathione==
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The crystal structure of human class alpha glutathione (GSH) S-transferase, A3-3 (hGSTA3-3) in complex with GSH was determined at 2.4 A. Despite, considerable amino acid sequence identity with other human class alpha, GSTs (e.g., hGSTA1-1), hGSTA3-3 is unique due to its exceptionally high, steroid double bond isomerase activity for the transformation of, Delta(5)-androstene-3,17-dione (Delta(5)-AD) to, Delta(4)-androstene-3,17-dione. A comparative analysis of the active, centers of hGSTA1-1 and hGSTA3-3 reveals that residues in positions 12 and, 208 may contribute to their disparate isomerase activity toward, Delta(5)-AD. Substitution of these two residues of hGSTA3-3 with the, corresponding residues in hGSTA1-1 followed by kinetic characterization of, the wild-type and the mutant enzymes supported this prediction. On the, basis of our model of the hGSTA3-3.GSH.Delta(5)-AD ternary complex and, available biochemical data, we propose that the thiolate group of, deprotonated GSH (GS(-)) serves as a base to initiate the reaction by, accepting a proton from the steroid and the nonionized hydroxyl group of, catalytic residue Y9 (HO-Y9) functions as part of a proton-conducting wire, to transfer a proton back to the steroid. Residue R15 may function to, stabilize the deprotonated thiolate group of GSH (GS(-)), and a GSH-bound, water molecule may donate a hydrogen bond to the 3-keto group of, Delta(5)-AD and thus help the thiolate of GS(-) to initiate the proton, transfer and the subsequent stabilization of the reaction intermediate.
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<StructureSection load='1tdi' size='340' side='right'caption='[[1tdi]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1tdi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TDI FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tdi OCA], [https://pdbe.org/1tdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tdi RCSB], [https://www.ebi.ac.uk/pdbsum/1tdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tdi ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GSTA3_HUMAN GSTA3_HUMAN] Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles. Catalyzes isomerization reactions that contribute to the biosynthesis of steroid hormones. Efficiently catalyze obligatory double-bond isomerizations of delta(5)-androstene-3,17-dione and delta(5)-pregnene-3,20-dione, precursors to testosterone and progesterone, respectively.<ref>PMID:15595823</ref> <ref>PMID:20083122</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/td/1tdi_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tdi ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The crystal structure of human class alpha glutathione (GSH) S-transferase A3-3 (hGSTA3-3) in complex with GSH was determined at 2.4 A. Despite considerable amino acid sequence identity with other human class alpha GSTs (e.g., hGSTA1-1), hGSTA3-3 is unique due to its exceptionally high steroid double bond isomerase activity for the transformation of Delta(5)-androstene-3,17-dione (Delta(5)-AD) to Delta(4)-androstene-3,17-dione. A comparative analysis of the active centers of hGSTA1-1 and hGSTA3-3 reveals that residues in positions 12 and 208 may contribute to their disparate isomerase activity toward Delta(5)-AD. Substitution of these two residues of hGSTA3-3 with the corresponding residues in hGSTA1-1 followed by kinetic characterization of the wild-type and the mutant enzymes supported this prediction. On the basis of our model of the hGSTA3-3.GSH.Delta(5)-AD ternary complex and available biochemical data, we propose that the thiolate group of deprotonated GSH (GS(-)) serves as a base to initiate the reaction by accepting a proton from the steroid and the nonionized hydroxyl group of catalytic residue Y9 (HO-Y9) functions as part of a proton-conducting wire to transfer a proton back to the steroid. Residue R15 may function to stabilize the deprotonated thiolate group of GSH (GS(-)), and a GSH-bound water molecule may donate a hydrogen bond to the 3-keto group of Delta(5)-AD and thus help the thiolate of GS(-) to initiate the proton transfer and the subsequent stabilization of the reaction intermediate.
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==About this Structure==
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Crystal structure of human glutathione S-transferase A3-3 and mechanistic implications for its high steroid isomerase activity.,Gu Y, Guo J, Pal A, Pan SS, Zimniak P, Singh SV, Ji X Biochemistry. 2004 Dec 21;43(50):15673-9. PMID:15595823<ref>PMID:15595823</ref>
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1TDI is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with GSH as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Glutathione_transferase Glutathione transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.18 2.5.1.18] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1TDI OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of human glutathione S-transferase A3-3 and mechanistic implications for its high steroid isomerase activity., Gu Y, Guo J, Pal A, Pan SS, Zimniak P, Singh SV, Ji X, Biochemistry. 2004 Dec 21;43(50):15673-9. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15595823 15595823]
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</div>
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[[Category: Glutathione transferase]]
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<div class="pdbe-citations 1tdi" style="background-color:#fffaf0;"></div>
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[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Gu, Y.]]
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[[Category: Guo, J.]]
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[[Category: Ji, X.]]
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[[Category: Pal, A.]]
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[[Category: Pan, S.S.]]
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[[Category: Singh, S.V.]]
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[[Category: Zimniak, P.]]
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[[Category: GSH]]
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[[Category: gst]]
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[[Category: hgsta3-3]]
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[[Category: steroid isomerase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 19:23:32 2007''
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==See Also==
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*[[Glutathione S-transferase 3D structures|Glutathione S-transferase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Gu Y]]
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[[Category: Guo J]]
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[[Category: Ji X]]
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[[Category: Pal A]]
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[[Category: Pan SS]]
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[[Category: Singh SV]]
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[[Category: Zimniak P]]

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Crystal Structure of hGSTA3-3 in Complex with Glutathione

PDB ID 1tdi

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