9eq5
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 9eq5 is ON HOLD Authors: Duhoo, Y., Buslov, I., Desmons, S. Description: CryoEM Structure of Phenylalanine Ammonia Lyase from Planctomyces brasilie...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==CryoEM Structure of Phenylalanine Ammonia Lyase from Planctomyces brasiliencis== | |
| + | <StructureSection load='9eq5' size='340' side='right'caption='[[9eq5]], [[Resolution|resolution]] 2.17Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[9eq5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rubinisphaera_brasiliensis Rubinisphaera brasiliensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9EQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9EQ5 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.17Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MDO:{2-[(1S)-1-AMINOETHYL]-4-METHYLIDENE-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>MDO</scene>, <scene name='pdbligand=PPH:[(1R)-1-AMINO-2-PHENYLETHYL]PHOSPHONIC+ACID'>PPH</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9eq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9eq5 OCA], [https://pdbe.org/9eq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9eq5 RCSB], [https://www.ebi.ac.uk/pdbsum/9eq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9eq5 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/F0SIS6_RUBBR F0SIS6_RUBBR] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Biocatalytic hydroamination of alkenes is an efficient and selective method to synthesize natural and unnatural amino acids. Phenylalanine ammonia-lyases (PALs) have been previously engineered to access a range of substituted phenylalanines and heteroarylalanines, but their substrate scope remains limited, typically including only arylacrylic acids. Moreover, the enantioselectivity in the hydroamination of electron-deficient substrates is often poor. Here, we report the structure-based engineering of PAL from Planctomyces brasiliensis (PbPAL), enabling preparative-scale enantioselective hydroaminations of previously inaccessible yet synthetically useful substrates, such as amide- and ester-containing fumaric acid derivatives. Through the elucidation of cryo-electron microscopy (cryo-EM) PbPAL structure and screening of the structure-based mutagenesis library, we identified the key active site residue L205 as pivotal for dramatically enhancing the enantioselectivity of hydroamination reactions involving electron-deficient substrates. Our engineered PALs demonstrated exclusive alpha-regioselectivity, high enantioselectivity, and broad substrate scope. The potential utility of the developed biocatalysts was further demonstrated by a preparative-scale hydroamination yielding tert-butyl protected l-aspartic acid, widely used as intermediate in peptide solid-phase synthesis. | ||
| - | + | Engineered Phenylalanine Ammonia-Lyases for the Enantioselective Synthesis of Aspartic Acid Derivatives.,Buslov I, Desmons S, Duhoo Y, Hu X Angew Chem Int Ed Engl. 2024 Jul 29;63(31):e202406008. doi: , 10.1002/anie.202406008. Epub 2024 Jun 17. PMID:38713131<ref>PMID:38713131</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 9eq5" style="background-color:#fffaf0;"></div> |
| - | [[Category: Desmons | + | == References == |
| - | [[Category: | + | <references/> |
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Rubinisphaera brasiliensis]] | ||
| + | [[Category: Buslov I]] | ||
| + | [[Category: Desmons S]] | ||
| + | [[Category: Duhoo Y]] | ||
Current revision
CryoEM Structure of Phenylalanine Ammonia Lyase from Planctomyces brasiliencis
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