This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


8s5b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:29, 17 April 2024) (edit) (undo)
 
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 8s5b is ON HOLD until 2026-02-23
+
==Crystal structure of the sulfoquinovosyl binding protein (SmoF) from A. tumefaciens sulfo-SMO pathway in complex with SQOctyl ligand==
-
 
+
<StructureSection load='8s5b' size='340' side='right'caption='[[8s5b]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
Authors: Snow, A.J.D., Sharma, M., Davies, G.J.
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[8s5b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8S5B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8S5B FirstGlance]. <br>
-
Description: Crystal structure of the sulfoquinovosyl binding protein (SmoF) from A. tumefaciens sulfo-SMO pathway in complex with SQOctyl ligand
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
[[Category: Unreleased Structures]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1H5E:[(2~{S},3~{S},4~{S},5~{R},6~{S})-6-octoxy-3,4,5-tris(oxidanyl)oxan-2-yl]methanesulfonic+acid'>A1H5E</scene></td></tr>
-
[[Category: Davies, G.J]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8s5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8s5b OCA], [https://pdbe.org/8s5b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8s5b RCSB], [https://www.ebi.ac.uk/pdbsum/8s5b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8s5b ProSAT]</span></td></tr>
-
[[Category: Snow, A.J.D]]
+
</table>
-
[[Category: Sharma, M]]
+
== Function ==
 +
[https://www.uniprot.org/uniprot/SMOF_AGRFC SMOF_AGRFC] Part of the ABC transporter complex SmoEFGH involved in sulfoquinovosyl glycerol (SQGro) uptake (Probable). Binds sulfoquinovosyl glycerol (SQGro) (PubMed:35074914). Can also bind sulfoquinovose (SQ), methyl alpha-sulfoquinovoside (SQMe) and a short-chain derivative of sulfoquinovosyl diacylglycerol (SQDG) (PubMed:35341160). Cannot bind D-glucose and D-glucuronic acid (PubMed:35074914).<ref>PMID:35074914</ref> <ref>PMID:35341160</ref> <ref>PMID:35074914</ref> <ref>PMID:35341160</ref>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Agrobacterium tumefaciens]]
 +
[[Category: Large Structures]]
 +
[[Category: Davies GJ]]
 +
[[Category: Sharma M]]
 +
[[Category: Snow AJD]]

Current revision

Crystal structure of the sulfoquinovosyl binding protein (SmoF) from A. tumefaciens sulfo-SMO pathway in complex with SQOctyl ligand

PDB ID 8s5b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/8s5b"
Personal tools