Template:STRUCTURE 1rfm

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(New page: {{Structure |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1rfm, resolution 2.50&Aring; (<scene name='initialview01'>initial scene</scene>) |SITE= |LIGAND= <scene name='pdbligand=MSE...)
Current revision (14:54, 17 February 2009) (edit) (undo)
 
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{{Structure
{{Structure
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|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1rfm, resolution 2.50&Aring; (<scene name='initialview01'>initial scene</scene>)
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|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1rfm]], resolution 2.50&Aring; (<scene name='initialview01'>default scene</scene>)}}}
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|SITE=
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|SITE= <scene name='pdbsite=AC1:Nad+Binding+Site+For+Residue+A+4001'>AC1</scene>, <scene name='pdbsite=AC2:Nad+Binding+Site+For+Residue+B+4002'>AC2</scene>, <scene name='pdbsite=AC3:Nad+Binding+Site+For+Residue+C+4003'>AC3</scene>, <scene name='pdbsite=AC4:Nad+Binding+Site+For+Residue+D+4004'>AC4</scene>, <scene name='pdbsite=AC5:Nad+Binding+Site+For+Residue+E+4005'>AC5</scene>, <scene name='pdbsite=AC6:Nad+Binding+Site+For+Residue+F+4006'>AC6</scene>, <scene name='pdbsite=AC7:Nad+Binding+Site+For+Residue+G+4007'>AC7</scene> and <scene name='pdbsite=AC8:Nad+Binding+Site+For+Residue+H+4008'>AC8</scene>
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|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>
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|LIGAND= <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/(R)-2-hydroxyacid_dehydrogenase (R)-2-hydroxyacid dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.272 1.1.1.272] </span>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/(R)-2-hydroxyacid_dehydrogenase (R)-2-hydroxyacid dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.272 1.1.1.272] </span>
|GENE= COMC, MDH, MJ1425 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2190 Methanocaldococcus jannaschii])
|GENE= COMC, MDH, MJ1425 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2190 Methanocaldococcus jannaschii])
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02615 Ldh_2]</span>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02615 Ldh_2]</span>
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|RELATEDENTRY=
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|NONSTDRES=<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rfm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfm OCA], [http://www.ebi.ac.uk/pdbsum/1rfm PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1rfm RCSB]</span>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rfm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfm OCA], [http://www.ebi.ac.uk/pdbsum/1rfm PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1rfm RCSB]</span>
 +
|FUNCTION={{GO|id=GO:0050578 | text = (R)-2-hydroxyacid dehydrogenase activity}}{{GO|id=GO:0016491 | text = oxidoreductase activity}}
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|PROCESS={{GO|id=GO:0019295 | text = coenzyme M biosynthetic process}}{{GO|id=GO:0008152 | text = metabolic process}}
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|COMPONENT={{GO|id=GO:0005737 | text = cytoplasm}}
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|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003767 Ipr003767]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF02615 PF02615]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=97385 d1rfma_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=97386 d1rfmb_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=97387 d1rfmc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=97388 d1rfmd_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=97389 d1rfme_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=97390 d1rfmf_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=97391 d1rfmg_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=97392 d1rfmh_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q58820 Q58820]</span>
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|CONSURF={{!}}-
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{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
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{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
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{{!}} '''Toggle Conservation Colors:'''
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{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
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Rows = identical sequences:
 +
<jmol>
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<jmolButton>
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<script></script>
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<text>A [x]</text>
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<name>jmb_1rfm_A</name>
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<title>toggle chain A</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
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</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
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<script></script>
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<text>B [x]</text>
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<name>jmb_1rfm_B</name>
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<title>toggle chain B</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
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<script></script>
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<text>C [x]</text>
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<name>jmb_1rfm_C</name>
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<title>toggle chain C</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
 +
<script></script>
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<text>D [x]</text>
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<name>jmb_1rfm_D</name>
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<title>toggle chain D</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
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<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
 +
<script></script>
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<text>E [x]</text>
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<name>jmb_1rfm_E</name>
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<title>toggle chain E</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
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</jmol>
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<jmol>
 +
<jmolButton>
 +
<script></script>
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<text>F [x]</text>
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<name>jmb_1rfm_F</name>
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<title>toggle chain F</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
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</jmol>
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<jmol>
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<jmolButton>
 +
<script></script>
 +
<text>G [x]</text>
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<name>jmb_1rfm_G</name>
 +
<title>toggle chain G</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
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</jmol>
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<jmol>
 +
<jmolButton>
 +
<script></script>
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<text>H [x]</text>
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<name>jmb_1rfm_H</name>
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<title>toggle chain H</title>
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<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
}}
}}

Current revision

Drag the structure with the mouse to rotate
1rfm, resolution 2.50Å ()
Sites: , , , , , , and
Ligands:
Non-Standard Residues:
Gene: COMC, MDH, MJ1425 (Methanocaldococcus jannaschii)
Activity: (R)-2-hydroxyacid dehydrogenase, with EC number 1.1.1.272
Domains: Ldh_2
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml


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