7h2b
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 7h2b is ON HOLD Authors: Ni, X., Godoy, A.S., Marples, P.G., Fairhead, M., Balcomb, B.H., Tomlinson, C.W.E., Koekemoer, L., Aschenbrenner, J.C., Lit...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with Z1272517105== | |
| - | + | <StructureSection load='7h2b' size='340' side='right'caption='[[7h2b]], [[Resolution|resolution]] 1.60Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[7h2b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Zika_virus Zika virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7H2B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7H2B FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.602Å</td></tr> | |
| - | [[Category: | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1AJ3:{(1S,2S)-1-methyl-2-[(3-methyl-1,2,4-thiadiazol-5-yl)amino]cyclopentyl}methanol'>A1AJ3</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene></td></tr> |
| - | [[Category: | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7h2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7h2b OCA], [https://pdbe.org/7h2b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7h2b RCSB], [https://www.ebi.ac.uk/pdbsum/7h2b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7h2b ProSAT]</span></td></tr> |
| - | [[Category: | + | </table> |
| - | [[Category: | + | == Function == |
| - | [[Category: | + | [https://www.uniprot.org/uniprot/POLG_ZIKV POLG_ZIKV] Protein C: Encapsulates the genomic RNA.[UniProtKB:P17763] prM: Acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is matured in the last step of virion assembly, presumably to avoid catastrophic activation of the viral fusion peptide induced by the acidic pH of the trans-Golgi network. After cleavage by host furin, the pr peptide is released in the extracellular medium and small envelope protein M and envelope protein E homodimers are dissociated.[UniProtKB:P17763] Envelope protein E: Binding to host cell surface receptor is followed by virus internalization through clathrin-mediated endocytosis. Envelope protein E is subsequently involved in membrane fusion between virion and host late endosomes. Synthesized as a homodimer with prM which acts as a chaperone for envelope protein E. After cleavage of prM, envelope protein E dissociate from small envelope protein M and homodimerizes.[UniProtKB:P17763] Non-structural protein 1: Involved in virus replication and regulation of the innate immune response.[UniProtKB:P17763] Non-structural protein 2A: May be involved viral RNA replication and capsid assembly.[UniProtKB:P09732] Non-structural protein 4A: Induces host endoplasmic reticulum membrane rearrangements leading to the formation of virus-induced membranous vesicles hosting the dsRNA and polymerase, functioning as a replication complex. NS4A might also regulate the ATPase activity of the helicase region of Serine protease NS3 chain.[UniProtKB:P17763] Peptide 2k: Functions as a signal peptide for NS4B and is required for the interferon antagonism activity of the latter.[UniProtKB:P17763] Non-structural protein 4B: Inhibits interferon (IFN)-induced host STAT1 phosphorylation and nuclear translocation, thereby preventing the establishment of cellular antiviral state by blocking the IFN-alpha/beta pathway.[UniProtKB:P17763] |
| - | [[Category: | + | __TOC__ |
| - | [[Category: Fearon | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Zika virus]] |
| - | [[Category: | + | [[Category: Aschenbrenner JC]] |
| - | [[Category: | + | [[Category: Balcomb BH]] |
| - | [[Category: | + | [[Category: Chandran AV]] |
| - | [[Category: | + | [[Category: Fairhead M]] |
| - | [[Category: | + | [[Category: Fearon D]] |
| - | [[Category: | + | [[Category: Godoy AS]] |
| - | [[Category: | + | [[Category: Koekemoer L]] |
| - | [[Category: Winokan | + | [[Category: Lithgo RM]] |
| - | [[Category: | + | [[Category: Marples PG]] |
| + | [[Category: Ni X]] | ||
| + | [[Category: Thompson W]] | ||
| + | [[Category: Tomlinson CWE]] | ||
| + | [[Category: Walsh MA]] | ||
| + | [[Category: Wild C]] | ||
| + | [[Category: Williams EP]] | ||
| + | [[Category: Winokan M]] | ||
| + | [[Category: Von Delft F]] | ||
Current revision
PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with Z1272517105
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Categories: Large Structures | Zika virus | Aschenbrenner JC | Balcomb BH | Chandran AV | Fairhead M | Fearon D | Godoy AS | Koekemoer L | Lithgo RM | Marples PG | Ni X | Thompson W | Tomlinson CWE | Walsh MA | Wild C | Williams EP | Winokan M | Von Delft F
