8z11

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: '''Unreleased structure''' The entry 8z11 is ON HOLD Authors: He, F.Y., Zhao, L.S., Li, K., Zhang, Y.Z., Liu, L.N. Description: Cryo-EM structure of haptophyte photosystem I [[Category...)
Current revision (10:15, 22 January 2025) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 8z11 is ON HOLD
+
==Cryo-EM structure of haptophyte photosystem I==
 +
<StructureSection load='8z11' size='340' side='right'caption='[[8z11]], [[Resolution|resolution]] 2.74&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[8z11]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Isochrysis_galbana Isochrysis galbana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8Z11 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8Z11 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.74&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A86:(3S,3S,5R,5R,6S,6R,8R)-3,5-dihydroxy-8-oxo-6,7-didehydro-5,5,6,6,7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3-yl+acetate'>A86</scene>, <scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DD6:(3S,3R,5R,6S,7cis)-7,8-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3-diol'>DD6</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=KC2:(2E)-3-[(21R)-9,14-diethenyl-21-(methoxycarbonyl)-4,8,13,18-tetramethyl-20-oxo-3,4-didehydrophorbin-3-yl-kappa~2~N~23~,N~25~]prop-2-enoato(2-)magnesium'>KC2</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=LMU:DODECYL-ALPHA-D-MALTOSIDE'>LMU</scene>, <scene name='pdbligand=PQN:PHYLLOQUINONE'>PQN</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8z11 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8z11 OCA], [https://pdbe.org/8z11 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8z11 RCSB], [https://www.ebi.ac.uk/pdbsum/8z11 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8z11 ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Haptophyta represents a major taxonomic group, with plastids derived from the primary plastids of red algae. Here, we elucidated the cryoelectron microscopy structure of the photosystem I-light-harvesting complex I (PSI-LHCI) supercomplex from the haptophyte Isochrysis galbana. The PSI core comprises 12 subunits, which have evolved differently from red algae and cryptophytes by losing the PsaO subunit while incorporating the PsaK subunit, which is absent in diatoms and dinoflagellates. The PSI core is encircled by 22 fucoxanthin-chlorophyll a/c-binding light-harvesting antenna proteins (iFCPIs) that form a trilayered antenna arrangement. Moreover, a pigment-binding subunit, L(iFP), which has not been identified in any other previously characterized PSI-LHCI supercomplexes, was determined in I. galbana PSI-iFCPI, presumably facilitating the interactions and energy transfer between peripheral iFCPIs and the PSI core. Calculation of excitation energy transfer rates by computational simulations revealed that the intricate pigment network formed within PSI-iFCPI ensures efficient transfer of excitation energy. Overall, our study provides a solid structural foundation for understanding the light-harvesting and energy transfer mechanisms in haptophyte PSI-iFCPI and provides insights into the evolution and structural variations of red-lineage PSI-LHCIs.
-
Authors: He, F.Y., Zhao, L.S., Li, K., Zhang, Y.Z., Liu, L.N.
+
Structural insights into the assembly and energy transfer of haptophyte photosystem I-light-harvesting supercomplex.,He FY, Zhao LS, Qu XX, Li K, Guo JP, Zhao F, Wang N, Qin BY, Chen XL, Gao J, Liu LN, Zhang YZ Proc Natl Acad Sci U S A. 2024 Dec 10;121(50):e2413678121. doi: , 10.1073/pnas.2413678121. Epub 2024 Dec 6. PMID:39642204<ref>PMID:39642204</ref>
-
Description: Cryo-EM structure of haptophyte photosystem I
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Zhang, Y.Z]]
+
<div class="pdbe-citations 8z11" style="background-color:#fffaf0;"></div>
-
[[Category: Zhao, L.S]]
+
== References ==
-
[[Category: Li, K]]
+
<references/>
-
[[Category: He, F.Y]]
+
__TOC__
-
[[Category: Liu, L.N]]
+
</StructureSection>
 +
[[Category: Isochrysis galbana]]
 +
[[Category: Large Structures]]
 +
[[Category: He FY]]
 +
[[Category: Li K]]
 +
[[Category: Liu LN]]
 +
[[Category: Zhang YZ]]
 +
[[Category: Zhao LS]]

Current revision

Cryo-EM structure of haptophyte photosystem I

PDB ID 8z11

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools