8zf6

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'''Unreleased structure'''
 
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The entry 8zf6 is ON HOLD
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==Cryo-EM structure of the xGPR4-Gs complex in pH6.7==
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<StructureSection load='8zf6' size='340' side='right'caption='[[8zf6]], [[Resolution|resolution]] 2.98&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[8zf6]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens], [https://en.wikipedia.org/wiki/Xenopus_tropicalis Xenopus tropicalis] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8ZF6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8ZF6 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.98&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8zf6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8zf6 OCA], [https://pdbe.org/8zf6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8zf6 RCSB], [https://www.ebi.ac.uk/pdbsum/8zf6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8zf6 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A6I8PUB9_XENTR A0A6I8PUB9_XENTR]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Animals have evolved pH-sensing membrane receptors, such as G-protein-coupled receptor 4 (GPR4), to monitor pH changes related to their physiology and generate adaptive reactions. However, the evolutionary trajectory and structural mechanism of proton sensing by GPR4 remain unresolved. Here, we observed a positive correlation between the optimal pH of GPR4 activity and the blood pH range across different species. By solving 7-cryoelectron microscopy (cryo-EM) structures of Xenopus tropicalis GPR4 (xtGPR4) and Mus musculus GPR4 (mmGPR4) under varying pH conditions, we identified that protonation of H(ECL2-45.47) and H(7.36) enabled polar network establishment and tighter association between the extracellular loop 2 (ECL2) and 7 transmembrane (7TM) domain, as well as a conserved propagating path, which are common mechanisms underlying protonation-induced GPR4 activation across different species. Moreover, protonation of distinct extracellular H(ECL2-45.41) contributed to the more acidic optimal pH range of xtGPR4. Overall, our study revealed common and distinct mechanisms of proton sensing by GPR4, from a structural, functional, and evolutionary perspective.
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Authors: Rong, N.K., Wen, X., Yang, F., Sun, J.P.
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Evolutionary study and structural basis of proton sensing by Mus GPR4 and Xenopus GPR4.,Wen X, Shang P, Chen H, Guo L, Rong N, Jiang X, Li X, Liu J, Yang G, Zhang J, Zhu K, Meng Q, He X, Wang Z, Liu Z, Cheng H, Zheng Y, Zhang B, Pang J, Liu Z, Xiao P, Chen Y, Liu L, Luo F, Yu X, Yi F, Zhang P, Yang F, Deng C, Sun JP Cell. 2025 Feb 6;188(3):653-670.e24. doi: 10.1016/j.cell.2024.12.001. Epub 2025 , Jan 2. PMID:39753131<ref>PMID:39753131</ref>
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Description: Cryo-EM structure of the xGPR4-Gs complex in pH6.7
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Sun, J.P]]
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<div class="pdbe-citations 8zf6" style="background-color:#fffaf0;"></div>
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[[Category: Yang, F]]
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== References ==
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[[Category: Rong, N.K]]
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<references/>
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[[Category: Wen, X]]
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Synthetic construct]]
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[[Category: Xenopus tropicalis]]
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[[Category: Rong NK]]
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[[Category: Sun JP]]
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[[Category: Wen X]]
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[[Category: Yang F]]

Current revision

Cryo-EM structure of the xGPR4-Gs complex in pH6.7

PDB ID 8zf6

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