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| - | [[Image:1sdr.jpg|left|200px]] | |
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| - | <!--
| + | ==CRYSTAL STRUCTURE OF AN RNA DODECAMER CONTAINING THE ESCHERICHIA COLI SHINE-DALGARNO SEQUENCE== |
| - | The line below this paragraph, containing "STRUCTURE_1sdr", creates the "Structure Box" on the page.
| + | <StructureSection load='1sdr' size='340' side='right'caption='[[1sdr]], [[Resolution|resolution]] 2.60Å' scene=''> |
| - | You may change the PDB parameter (which sets the PDB file loaded into the applet)
| + | == Structural highlights == |
| - | or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
| + | <table><tr><td colspan='2'>[[1sdr]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SDR FirstGlance]. <br> |
| - | or leave the SCENE parameter empty for the default display.
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6Å</td></tr> |
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| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sdr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sdr OCA], [https://pdbe.org/1sdr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sdr RCSB], [https://www.ebi.ac.uk/pdbsum/1sdr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sdr ProSAT]</span></td></tr> |
| - | {{STRUCTURE_1sdr| PDB=1sdr | SCENE= }}
| + | </table> |
| - | | + | __TOC__ |
| - | '''CRYSTAL STRUCTURE OF AN RNA DODECAMER CONTAINING THE ESCHERICHIA COLI SHINE-DALGARNO SEQUENCE'''
| + | </StructureSection> |
| - | | + | [[Category: Large Structures]] |
| - | | + | [[Category: Bald R]] |
| - | ==Overview== | + | [[Category: Erdmann VA]] |
| - | The synthetic dodecameric RNA fragment rUAAGGAGGUGAU resembles a region upstream of the initiation site in prokaryotic mRNAs whereas the pyrimidine-rich complementary strand is identical to the last 12 nucleotides of Escherichia coli 16 S rRNA. The complex thus serves as a model for the Shine-Dalgarno interaction which is required for proper initiation of translation. The crystal structure of rUAAGGAGGUGUA.rAUCACCUCCUUA has been determined at 2.6 A resolution and refined against 2957 1 sigma(F) structure amplitudes to an R-value of 0.195. The unit cell of the triclinic crystals contains two double-stranded RNA molecules. The conformation of the two duplexes is similar, with a root-mean-square deviation of 0.683 A between equivalent atoms, and resembles calf thymus A-DNA as determined by X-ray fiber diffraction methods. Both molecules from continuous helices that penetrate the entire crystal, but the dinucleotide step in between dodecameric duplexes has an unusual geometry with a negative twist angle. The long helices cross over each other in a characteristic manner by inserting the backbone of one molecule into the minor groove of another. These contacts are stabilized by several direct intermolecular hydrogen bonds most of which are mediated by 2'-hydroxyl groups of the ribose sugars suggesting a general mode for the interaction between RNA molecules which is different from DNA-DNA interactions.
| + | [[Category: Fuerste J-P]] |
| - | | + | [[Category: Heinemann U]] |
| - | ==About this Structure== | + | [[Category: Schindelin H]] |
| - | Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SDR OCA]. | + | [[Category: Zhang M]] |
| - | | + | |
| - | ==Reference== | + | |
| - | Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence., Schindelin H, Zhang M, Bald R, Furste JP, Erdmann VA, Heinemann U, J Mol Biol. 1995 Jun 9;249(3):595-603. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/7540215 7540215]
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| - | [[Category: Bald, R.]] | + | |
| - | [[Category: Erdmann, V A.]] | + | |
| - | [[Category: Fuerste, J P.]] | + | |
| - | [[Category: Heinemann, U.]] | + | |
| - | [[Category: Schindelin, H.]] | + | |
| - | [[Category: Zhang, M.]] | + | |
| - | [[Category: A-rna]]
| + | |
| - | [[Category: Double helix]]
| + | |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 08:35:09 2008''
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