9f9v

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Current revision (08:00, 9 January 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9f9v is ON HOLD until Paper Publication
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==Crystal structure of 892_05174 from Planctomycetota strain 892==
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<StructureSection load='9f9v' size='340' side='right'caption='[[9f9v]], [[Resolution|resolution]] 1.57&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9f9v]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopirellula Rhodopirellula]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9F9V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9F9V FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.57&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MPO:3[N-MORPHOLINO]PROPANE+SULFONIC+ACID'>MPO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9f9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9f9v OCA], [https://pdbe.org/9f9v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9f9v RCSB], [https://www.ebi.ac.uk/pdbsum/9f9v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9f9v ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/M5T2H2_9BACT M5T2H2_9BACT]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Marine brown algae produce the highly recalcitrant polysaccharide fucoidan, contributing to long-term oceanic carbon storage and climate regulation. Fucoidan is degraded by specialized heterotrophic bacteria, which promote ecosystem function and global carbon turnover using largely uncharacterized mechanisms. Here, we isolate and study two Planctomycetota strains from the microbiome associated with the alga Fucus spiralis, which grow efficiently on chemically diverse fucoidans. One of the strains appears to internalize the polymer, while the other strain degrades it extracellularly. Multi-omic approaches show that fucoidan breakdown is mediated by the expression of divergent polysaccharide utilization loci, and endo-fucanases of family GH168 are strongly upregulated during fucoidan digestion. Enzymatic assays and structural biology studies reveal how GH168 endo-fucanases degrade various fucoidan cores from brown algae, assisted by auxiliary hydrolytic enzymes. Overall, our results provide insights into fucoidan processing mechanisms in macroalgal-associated bacteria.
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Authors:
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Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota.,Perez-Cruz C, Moraleda-Montoya A, Liebana R, Terrones O, Arrizabalaga U, Garcia-Alija M, Lorizate M, Martinez Gascuena A, Garcia-Alvarez I, Nieto-Garai JA, Olazar-Intxausti J, Rodriguez-Colinas B, Mann E, Chiara JL, Contreras FX, Guerin ME, Trastoy B, Alonso-Saez L Nat Commun. 2024 Dec 30;15(1):10906. doi: 10.1038/s41467-024-55268-w. PMID:39738071<ref>PMID:39738071</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 9f9v" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Rhodopirellula]]
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[[Category: Alonso-Saez L]]
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[[Category: Arrizabalaga U]]
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[[Category: Contreras FX]]
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[[Category: Garcia-Alija M]]
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[[Category: Guerin ME]]
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[[Category: Liebana R]]
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[[Category: Lorizate M]]
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[[Category: Moraleda-Montoya A]]
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[[Category: Perez-Cruz C]]
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[[Category: Terrones O]]
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[[Category: Trastoy B]]

Current revision

Crystal structure of 892_05174 from Planctomycetota strain 892

PDB ID 9f9v

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