User:Jaime Prilusky/Test/compare

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(59 intermediate revisions not shown.)
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==Compare Structures==
==Compare Structures==
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 +
<scene name='10/1051440/4you/1'>three surfaces</scene>
<StructureSection load='' size='350' side='right' caption='' scene=''>
<StructureSection load='' size='350' side='right' caption='' scene=''>
 +
<!-- /1051453/ /1052894//1052900/ /919062/ /399854/ /1050894/ -->
 +
 +
<!--
 +
===SAT scenes===
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*<scene name='10/1051440/Gol_binding/1'>Gol_binding</scene>
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*<scene name='10/1051440/1acj/1'>1acj 1</scene>
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*<scene name='10/1051440/1acj/2'>1acj 2</scene>
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-->
 +
===PyMOL .pse scenes===
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*<scene name='10/1051440/MET/2'>MET onY</scene>
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*<scene name='10/1051440/MET/7'>MET onXY</scene>
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*<scene name='10/1051440/MET/6'>MET rock</scene>
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*<scene name='10/1051440/MET/4'>MET wobble</scene>
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*<scene name='10/1051440/Bhtest/1'>Bhtest on XY</scene>
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<b>require jmol-16.2.19</b> (set on Misc preferences <i>Use advanced version of JSmol</i>)
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*<scene name='10/1051440/1fsc/1'>1fsc with Distance</scene>
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*<scene name='10/1051440/MET/9'>Met Atom Names Dist</scene>
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*<scene name='10/1051440/Gol_Binding/1'>Gol Binding on XY</scene>
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 +
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<b>regular PDB file scene</b> (not using PyMOL reader)
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*<scene name='10/1051440/3rec/1'>3rec onY</scene>
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<!--
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<jmol><jmolLink>
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<script>load /wiki/scripts/10/1051440/MET/MET.pse;
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set spinX = 5; set spinY = 5; set spinZ = 0; spinFps = 20;
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spin axisangle {1.0 1.0 0.0} 10.0; spin on;
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</script>
 +
<text>script MET on XY</text>
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</jmolLink></jmol>
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-->
 +
<!--
 +
Download <span class="plainlinks alert">[https://proteopedia.org/cgi-bin/pprstr?dwnl/d Deposited] [https://proteopedia.org/cgi-bin/pprstr?dwnl/p Dependable] [https://proteopedia.org/cgi-bin/pprstr?dwnl/a Aligned]</span>
 +
<scene name='10/1051440/1cnr/1'>1cnr</scene>
<jmol>
<jmol>
-
<jmolMenu>
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<jmolMenu>
-
<item><text>Select refined structure</text>
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<item><text>Select structure</text>
<script>zap;</script>
<script>zap;</script>
</item>
</item>
 +
<item>
<item>
-
<text>1agx_revised</text>
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<text>1agx</text>
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<script>zap; load files "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/1agx_revised.cif" "=1agx"; script /cgi-bin/superimpose;</script>
+
<script>zap;
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load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/1agx"; "/cgi-bin/pprspt";
 +
</script>
</item>
</item>
<item>
<item>
-
<text>1nns_revised</text>
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<text>1nns</text>
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<script>zap; load files "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/1nns_revised.cif" "*1nns"; script /cgi-bin/superimpose;</script>
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<script>zap;
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load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/1nns"; "/cgi-bin/pprspt";
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</script>
</item>
</item>
<item>
<item>
-
<text>1o7j_revised</text>
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<text>1o7j</text>
-
<script>zap; load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/1o7j_revised.cif" "*1o7j"; script /cgi-bin/superimpose;</script>
+
<script>zap;
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load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/1o7j"; "/cgi-bin/pprspt";
 +
</script>
</item>
</item>
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<item>
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<text>1wls</text>
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<script>zap;
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load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/1wls"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
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<text>1zcf</text>
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<script>zap;
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load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/1zcf"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>2gvn</text>
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<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/2gvn"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>2jk0</text>
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<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/2jk0"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>2wlt</text>
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<script>zap;
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load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/2wlt"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>3pga</text>
 +
<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/3pga"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>4o47</text>
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<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/4o47"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>4q0m</text>
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<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/4q0m"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>5b74</text>
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<script>zap;
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load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/5b74"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>5k3o</text>
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<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/5k3o"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>5k45</text>
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<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/5k45"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>5k4g</text>
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<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/5k4g"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>5mq5</text>
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<script>zap;
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load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/5mq5"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>5ot0</text>
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<script>zap;
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load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/5ot0"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>6rud</text>
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<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/6rud"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>6ruf</text>
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<script>zap;
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load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/6ruf"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>6syh</text>
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<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/6syh"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>6uog</text>
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<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/6uog"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>6v5f</text>
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<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/6v5f"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>6wz6</text>
 +
<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/6wz6"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>7a0u</text>
 +
<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/7a0u"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>7p9c</text>
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<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/7p9c"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>7r57</text>
 +
<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/7r57"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>7r5q</text>
 +
<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/7r5q"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>7u6m</text>
 +
<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/7u6m"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>8ecd</text>
 +
<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/8ecd"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
<item>
 +
<text>8h48</text>
 +
<script>zap;
 +
load file "/cgi-bin/pprstr?bc356b44effd36197439439e31c1852b/8h48"; "/cgi-bin/pprspt";
 +
</script>
 +
</item>
 +
 +
</jmolMenu>
</jmolMenu>
</jmol>
</jmol>
Line 30: Line 265:
<jmol>
<jmol>
<jmolButton>
<jmolButton>
-
<script>!exit; delay 1.2; model 1</script>
+
<script>!exit; select:A; hide selected; select:B; display selected;</script>
-
<text>structure 1</text>
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<text>dependable structure</text>
</jmolButton>
</jmolButton>
<jmolButton>
<jmolButton>
-
<script>!exit; delay 1.5; model 2</script>
+
<script>select:B; hide selected; select:A; display selected;</script>
-
<text>structure 2</text>
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<text>deposited structure</text>
</jmolButton>
</jmolButton>
</jmol>
</jmol>
 +
<jmol>
<jmol>
<jmolButton>
<jmolButton>
-
<script>!exit; delay 1.5; model 0</script>
+
<script>select all; display selected;</script>
-
<text>both</text>
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<text>both structures</text>
</jmolButton>
</jmolButton>
 +
</jmol>
 +
-->
 +
<!--
 +
testing save
 +
[https://proteopedia.org/cgi-bin/pprstr?dwnl/d download deposited]
 +
[https://proteopedia.org/cgi-bin/pprstr?dwnl/p download dependable]
 +
[https://proteopedia.org/cgi-bin/pprstr?dwnl/a download both]
 +
<input type="button" value="download deposited" onclick="alert('1');">
 +
-->
 +
<!--
 +
<jmol>
<jmolButton>
<jmolButton>
<script>animation mode loop; animation on</script>
<script>animation mode loop; animation on</script>
Line 50: Line 297:
</jmolButton>
</jmolButton>
</jmol>
</jmol>
-
 
+
-->
</StructureSection>
</StructureSection>
 +
 +
 +
<!--
 +
select all; cartoon
 +
select *A; color blue
 +
select *B; color red
 +
select ligand; wireframe 0.25
 +
select solvent; spacefill 0.25
 +
select all
 +
-->

Current revision

Compare Structures

Drag the structure with the mouse to rotate


Proteopedia Page Contributors and Editors (what is this?)

Jaime Prilusky

Retrieved from "http://52.214.119.220/wiki/index.php/User:Jaime_Prilusky/Test/compare"
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