9ilx

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(New page: '''Unreleased structure''' The entry 9ilx is ON HOLD until Paper Publication Authors: Swaleeha, A., Bhattacharyya, S. Description: Thanatin VF16QK in complex with LPS [[Category: Unrel...)
Current revision (18:05, 7 May 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9ilx is ON HOLD until Paper Publication
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==Thanatin VF16QK in complex with LPS==
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<StructureSection load='9ilx' size='340' side='right'caption='[[9ilx]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9ilx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Podisus_maculiventris Podisus maculiventris]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9ILX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9ILX FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DLY:D-LYSINE'>DLY</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9ilx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9ilx OCA], [https://pdbe.org/9ilx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9ilx RCSB], [https://www.ebi.ac.uk/pdbsum/9ilx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9ilx ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Host defense antimicrobial peptides (AMPs) are promising lead molecules with which to develop antibiotics against drug-resistant bacterial pathogens. Thanatin, an inducible antimicrobial peptide involved in the host defense of Podisus maculiventris insects, is gaining considerable attention in the generation of novel classes of antibiotics. Thanatin or thanatin-based analog peptides are extremely potent in killing bacterial pathogens in the Enterobacteriaceae family, including drug-resistant strains of Escherichia coli and Klebsiella pneumoniae. A single disulfide bond that covalently links two anti-parallel beta-strands in thanatin could be pivotal to its selective antibacterial activity and mode of action. However, potential correlations of the disulfide covalent bond with structure, activity and target binding in thanatin peptides are currently unclear to. Here, we examined a 16-residue designed thanatin peptide, namely disulfide-bonded VF16QK, and its Cys to Ser substituted variant, VF16QK(Ser), to delineate their structure-activity relationships. Bacterial growth inhibitory activity was only detected for the disulfide-bonded VF16QK peptide. Mechanistically, both peptides vastly differ in their bacterial cell permeabilizations, atomic-resolution structures, interactions with the LPS-outer membrane and target periplasmic protein LptA(m) binding. In particular, analysis of the 3-D structures of the two peptides revealed an altered folded conformation for the VF16QK(Ser) peptide that was correlated with diminished LPS-outer membrane permeabilization and target interactions. Analysis of docked complexes of LPS-thanatin peptides indicated potential structural requirements and conformational adaptation for antimicrobial activity. Collectively, these observations contrast with those for the disulfide-bonded beta-hairpin antimicrobial protegrin and tachyplesin peptides, where disulfide bonds are dispensable for activity. We surmise that the atomistic structures and associated molecular interactions presented in this work can be utilized to design novel thanatin-based antibiotics.
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Authors: Swaleeha, A., Bhattacharyya, S.
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Single Disulfide Bond in Host Defense Thanatin Analog Peptides: Antimicrobial Activity, Atomic-Resolution Structures and Target Interactions.,Abdullah SJ, Guan JS, Mu Y, Bhattacharjya S Int J Mol Sci. 2024 Dec 24;26(1):51. doi: 10.3390/ijms26010051. PMID:39795909<ref>PMID:39795909</ref>
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Description: Thanatin VF16QK in complex with LPS
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Bhattacharyya, S]]
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<div class="pdbe-citations 9ilx" style="background-color:#fffaf0;"></div>
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[[Category: Swaleeha, A]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Podisus maculiventris]]
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[[Category: Bhattacharyya S]]
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[[Category: Swaleeha A]]

Current revision

Thanatin VF16QK in complex with LPS

PDB ID 9ilx

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