9g7g

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: '''Unreleased structure''' The entry 9g7g is ON HOLD Authors: Baumann, U., Uthoff, M., Hermanns, T., Hofmann, K. Description: Structure of the clippase PaJOS from Pigmentiphaga aceris ...)
Current revision (05:27, 23 April 2025) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 9g7g is ON HOLD
+
==Structure of the clippase PaJOS from Pigmentiphaga aceris==
 +
<StructureSection load='9g7g' size='340' side='right'caption='[[9g7g]], [[Resolution|resolution]] 1.89&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[9g7g]] is a 24 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Pigmentiphaga_aceris Pigmentiphaga aceris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9G7G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9G7G FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.89&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AYE:PROP-2-EN-1-AMINE'>AYE</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9g7g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9g7g OCA], [https://pdbe.org/9g7g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9g7g RCSB], [https://www.ebi.ac.uk/pdbsum/9g7g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9g7g ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A5C0B1L0_9BURK A0A5C0B1L0_9BURK]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Many intracellular bacteria secrete deubiquitinase (DUB) effectors into eukaryotic host cells to keep the bacterial surface or the enclosing vesicle membrane free of ubiquitin marks. This study describes a family of DUBs from several bacterial genera, including Simkania, Parachlamydia, Burkholderia, and Pigmentiphaga, which is structurally related to eukaryotic Josephin-type DUBs but contains members that catalyze a unique destructive substrate deubiquitination. These ubiquitin C-terminal clippases (UCCs) cleave ubiquitin before the C-terminal diGly motif, thereby truncating the modifier and leaving a remnant on the substrate. By comparing the crystal structures of substrate-bound clippases and a closely related conventional DUB, we identified the factors causing this shift and found them to be conserved in other clippases, including one highly specific for M1-linked ubiquitin chains. This enzyme class has great potential to serve as tools for studying the ubiquitin system, particularly aspects involving branched chains.
-
Authors: Baumann, U., Uthoff, M., Hermanns, T., Hofmann, K.
+
A family of bacterial Josephin-like deubiquitinases with an irreversible cleavage mode.,Hermanns T, Kolek S, Uthoff M, de Heiden RA, Mulder MPC, Baumann U, Hofmann K Mol Cell. 2025 Mar 20;85(6):1202-1215.e5. doi: 10.1016/j.molcel.2025.02.002. Epub , 2025 Mar 3. PMID:40037356<ref>PMID:40037356</ref>
-
Description: Structure of the clippase PaJOS from Pigmentiphaga aceris
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Hofmann, K]]
+
<div class="pdbe-citations 9g7g" style="background-color:#fffaf0;"></div>
-
[[Category: Hermanns, T]]
+
== References ==
-
[[Category: Baumann, U]]
+
<references/>
-
[[Category: Uthoff, M]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Pigmentiphaga aceris]]
 +
[[Category: Baumann U]]
 +
[[Category: Hermanns T]]
 +
[[Category: Hofmann K]]
 +
[[Category: Uthoff M]]

Current revision

Structure of the clippase PaJOS from Pigmentiphaga aceris

PDB ID 9g7g

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools