9g7g
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 9g7g is ON HOLD Authors: Baumann, U., Uthoff, M., Hermanns, T., Hofmann, K. Description: Structure of the clippase PaJOS from Pigmentiphaga aceris ...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Structure of the clippase PaJOS from Pigmentiphaga aceris== | |
| + | <StructureSection load='9g7g' size='340' side='right'caption='[[9g7g]], [[Resolution|resolution]] 1.89Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[9g7g]] is a 24 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Pigmentiphaga_aceris Pigmentiphaga aceris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9G7G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9G7G FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.89Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AYE:PROP-2-EN-1-AMINE'>AYE</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9g7g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9g7g OCA], [https://pdbe.org/9g7g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9g7g RCSB], [https://www.ebi.ac.uk/pdbsum/9g7g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9g7g ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A0A5C0B1L0_9BURK A0A5C0B1L0_9BURK] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Many intracellular bacteria secrete deubiquitinase (DUB) effectors into eukaryotic host cells to keep the bacterial surface or the enclosing vesicle membrane free of ubiquitin marks. This study describes a family of DUBs from several bacterial genera, including Simkania, Parachlamydia, Burkholderia, and Pigmentiphaga, which is structurally related to eukaryotic Josephin-type DUBs but contains members that catalyze a unique destructive substrate deubiquitination. These ubiquitin C-terminal clippases (UCCs) cleave ubiquitin before the C-terminal diGly motif, thereby truncating the modifier and leaving a remnant on the substrate. By comparing the crystal structures of substrate-bound clippases and a closely related conventional DUB, we identified the factors causing this shift and found them to be conserved in other clippases, including one highly specific for M1-linked ubiquitin chains. This enzyme class has great potential to serve as tools for studying the ubiquitin system, particularly aspects involving branched chains. | ||
| - | + | A family of bacterial Josephin-like deubiquitinases with an irreversible cleavage mode.,Hermanns T, Kolek S, Uthoff M, de Heiden RA, Mulder MPC, Baumann U, Hofmann K Mol Cell. 2025 Mar 20;85(6):1202-1215.e5. doi: 10.1016/j.molcel.2025.02.002. Epub , 2025 Mar 3. PMID:40037356<ref>PMID:40037356</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 9g7g" style="background-color:#fffaf0;"></div> |
| - | [[Category: Hermanns | + | == References == |
| - | [[Category: | + | <references/> |
| - | [[Category: Uthoff | + | __TOC__ |
| + | </StructureSection> | ||
| + | [[Category: Homo sapiens]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Pigmentiphaga aceris]] | ||
| + | [[Category: Baumann U]] | ||
| + | [[Category: Hermanns T]] | ||
| + | [[Category: Hofmann K]] | ||
| + | [[Category: Uthoff M]] | ||
Current revision
Structure of the clippase PaJOS from Pigmentiphaga aceris
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