9d0v
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 9d0v is ON HOLD Authors: Kwiatkowski, N., Liang, T., Sha, Z., Collier, P.N., Yang, A., Sathappa, M., Paul, A., Su, L., Zheng, X., Aversa, R., Li, K....) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of CDK2/CyclinE1 in complex with Cpd 2== | |
| - | + | <StructureSection load='9d0v' size='340' side='right'caption='[[9d0v]], [[Resolution|resolution]] 2.54Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[9d0v]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9D0V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9D0V FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.54Å</td></tr> | |
| - | [[Category: | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A1A1H:6-chloro-8-cyclopentyl-2-[4-(ethanesulfonyl)-2-methylanilino]pyrido[2,3-d]pyrimidin-7(8H)-one'>A1A1H</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene>, <scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene></td></tr> |
| - | [[Category: | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9d0v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9d0v OCA], [https://pdbe.org/9d0v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9d0v RCSB], [https://www.ebi.ac.uk/pdbsum/9d0v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9d0v ProSAT]</span></td></tr> |
| - | [[Category: | + | </table> |
| - | [[Category: | + | == Function == |
| - | [[Category: | + | [https://www.uniprot.org/uniprot/CDK2_HUMAN CDK2_HUMAN] Serine/threonine-protein kinase involved in the control of the cell cycle; essential for meiosis, but dispensable for mitosis. Phosphorylates CTNNB1, USP37, p53/TP53, NPM1, CDK7, RB1, BRCA2, MYC, NPAT, EZH2. Interacts with cyclins A, B1, B3, D, or E. Triggers duplication of centrosomes and DNA. Acts at the G1-S transition to promote the E2F transcriptional program and the initiation of DNA synthesis, and modulates G2 progression; controls the timing of entry into mitosis/meiosis by controlling the subsequent activation of cyclin B/CDK1 by phosphorylation, and coordinates the activation of cyclin B/CDK1 at the centrosome and in the nucleus. Crucial role in orchestrating a fine balance between cellular proliferation, cell death, and DNA repair in human embryonic stem cells (hESCs). Activity of CDK2 is maximal during S phase and G2; activated by interaction with cyclin E during the early stages of DNA synthesis to permit G1-S transition, and subsequently activated by cyclin A2 (cyclin A1 in germ cells) during the late stages of DNA replication to drive the transition from S phase to mitosis, the G2 phase. EZH2 phosphorylation promotes H3K27me3 maintenance and epigenetic gene silencing. Phosphorylates CABLES1 (By similarity). Cyclin E/CDK2 prevents oxidative stress-mediated Ras-induced senescence by phosphorylating MYC. Involved in G1-S phase DNA damage checkpoint that prevents cells with damaged DNA from initiating mitosis; regulates homologous recombination-dependent repair by phosphorylating BRCA2, this phosphorylation is low in S phase when recombination is active, but increases as cells progress towards mitosis. In response to DNA damage, double-strand break repair by homologous recombination a reduction of CDK2-mediated BRCA2 phosphorylation. Phosphorylation of RB1 disturbs its interaction with E2F1. NPM1 phosphorylation by cyclin E/CDK2 promotes its dissociates from unduplicated centrosomes, thus initiating centrosome duplication. Cyclin E/CDK2-mediated phosphorylation of NPAT at G1-S transition and until prophase stimulates the NPAT-mediated activation of histone gene transcription during S phase. Required for vitamin D-mediated growth inhibition by being itself inactivated. Involved in the nitric oxide- (NO) mediated signaling in a nitrosylation/activation-dependent manner. USP37 is activated by phosphorylation and thus triggers G1-S transition. CTNNB1 phosphorylation regulates insulin internalization.<ref>PMID:10499802</ref> <ref>PMID:11051553</ref> <ref>PMID:10995386</ref> <ref>PMID:10995387</ref> <ref>PMID:10884347</ref> <ref>PMID:11113184</ref> <ref>PMID:15800615</ref> <ref>PMID:18372919</ref> <ref>PMID:20147522</ref> <ref>PMID:20079829</ref> <ref>PMID:20935635</ref> <ref>PMID:20195506</ref> <ref>PMID:19966300</ref> <ref>PMID:21262353</ref> <ref>PMID:21596315</ref> <ref>PMID:21319273</ref> <ref>PMID:17495531</ref> |
| - | [[Category: | + | == References == |
| - | [[Category: | + | <references/> |
| - | [[Category: | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | [[Category: | + | [[Category: Homo sapiens]] |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Aversa R]] |
| - | [[Category: | + | [[Category: Breitkopf SB]] |
| - | [[Category: | + | [[Category: Chen D]] |
| - | [[Category: | + | [[Category: Collier PN]] |
| - | [[Category: | + | [[Category: Growney JD]] |
| - | [[Category: | + | [[Category: Howarth CL]] |
| - | [[Category: | + | [[Category: Jo H]] |
| - | [[Category: | + | [[Category: Kwiatkowski N]] |
| - | [[Category: Yuan | + | [[Category: Li K]] |
| - | [[Category: | + | [[Category: Liang T]] |
| + | [[Category: Mehovic R]] | ||
| + | [[Category: Paul A]] | ||
| + | [[Category: Sathappa M]] | ||
| + | [[Category: Sha Z]] | ||
| + | [[Category: Su L]] | ||
| + | [[Category: Weiss M]] | ||
| + | [[Category: Williams J]] | ||
| + | [[Category: Yang A]] | ||
| + | [[Category: Yuan K]] | ||
| + | [[Category: Zheng X]] | ||
Current revision
Crystal structure of CDK2/CyclinE1 in complex with Cpd 2
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Categories: Homo sapiens | Large Structures | Aversa R | Breitkopf SB | Chen D | Collier PN | Growney JD | Howarth CL | Jo H | Kwiatkowski N | Li K | Liang T | Mehovic R | Paul A | Sathappa M | Sha Z | Su L | Weiss M | Williams J | Yang A | Yuan K | Zheng X
