9j31

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'''Unreleased structure'''
 
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The entry 9j31 is ON HOLD
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==cryo-EM structure of zebrafish GPR4-Gs complex at pH 8.5==
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<StructureSection load='9j31' size='340' side='right'caption='[[9j31]], [[Resolution|resolution]] 3.05&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9j31]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio], [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli], [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens], [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9J31 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9J31 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.05&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9j31 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9j31 OCA], [https://pdbe.org/9j31 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9j31 RCSB], [https://www.ebi.ac.uk/pdbsum/9j31 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9j31 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GBB1_HUMAN GBB1_HUMAN] Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.<ref>PMID:18611381</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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G protein-coupled receptor 4 (GPR4) belongs to the subfamily of proton-sensing GPCRs (psGPCRs), which detect pH changes in extracellular environment and regulate diverse physiological responses. GPR4 was found to be overactivated in acidic tumor microenvironment as well as inflammation sites, with a triad of acidic residues within the transmembrane domain identified as crucial for proton sensing. However, the 3D structure remains unknown, and the roles of other conserved residues within psGPCRs are not well understood. Here we report cryo-electron microscopy (cryo-EM) structures of active zebrafish GPR4 at both pH 6.5 and 8.5, each highlighting a distribution of histidine and acidic residues at the extracellular region. Cell-based assays show that these ionizable residues moderately influence the proton-sensing capacity of zebrafish GPR4, compared to the more significant effects of the triad residues. Furthermore, we reveal a cluster of aromatic residues within the orthosteric pocket that may propagate the signaling to the intercellular region via repacking the aromatic patch at the central region. This study provides a framework for future signaling and functional investigation of psGPCRs.
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Authors: Ma, Y.T., Tang, M.Y., Song, G.J., Ru, H.
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Cryo-EM structure of an activated GPR4-Gs signaling complex.,Ma Y, Wang Y, Tang M, Weng Y, Chen Y, Xu Y, An S, Wu Y, Zhao S, Xu H, Li D, Liu M, Lu W, Ru H, Song G Nat Commun. 2025 Jan 11;16(1):605. doi: 10.1038/s41467-025-55901-2. PMID:39799123<ref>PMID:39799123</ref>
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Description: cryo-EM structure of zebrafish GPR4-Gs complex at pH 8.5
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Ru, H]]
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<div class="pdbe-citations 9j31" style="background-color:#fffaf0;"></div>
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[[Category: Ma, Y.T]]
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== References ==
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[[Category: Song, G.J]]
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<references/>
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[[Category: Tang, M.Y]]
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__TOC__
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</StructureSection>
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[[Category: Danio rerio]]
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[[Category: Escherichia coli]]
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Mus musculus]]
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[[Category: Synthetic construct]]
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[[Category: Ma YT]]
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[[Category: Ru H]]
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[[Category: Song GJ]]
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[[Category: Tang MY]]

Current revision

cryo-EM structure of zebrafish GPR4-Gs complex at pH 8.5

PDB ID 9j31

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