9j3u

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(New page: '''Unreleased structure''' The entry 9j3u is ON HOLD Authors: Description: Category: Unreleased Structures)
Current revision (05:30, 23 April 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9j3u is ON HOLD
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==Crystal structure of tyrosine phenol-lyase in complex with 3,5-dihydroxybenzoic acid==
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<StructureSection load='9j3u' size='340' side='right'caption='[[9j3u]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9j3u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Morganella_morganii_subsp._morganii Morganella morganii subsp. morganii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9J3U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9J3U FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=34D:3,5-DIHYDROXYBENZOATE'>34D</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9j3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9j3u OCA], [https://pdbe.org/9j3u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9j3u RCSB], [https://www.ebi.ac.uk/pdbsum/9j3u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9j3u ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/J7TAF3_MORMO J7TAF3_MORMO]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Phenol is produced by beta-elimination of l-tyrosine (Tyr) catalyzed by tyrosine phenol-lyase (TPL) during intestinal bacterial metabolism. Phenol and its conjugate, phenyl sulfate (PhS), are protein-bound uremic toxins (PBUTs). Elevated levels of phenol and PhS are strongly implicated in the etiology and outcomes of uremia. Because hemodialysis is insufficient in removing phenol and PhS, novel methods are necessary for inhibiting phenol production during bacterial metabolism. We explored TPL inhibitors and found that dietary polyphenols, particularly gallic acid (GA), strongly inhibited TPL-catalyzed phenol production. A GA derivative, 3,5-dihydroxybenzoic acid (3,5DHBA), competitively inhibited TPL and significantly decreased phenol levels in TPL-expressing bacteria (Morganella morganii and Citrobacter koseri) and Tyr-rich-diet-fed C57BL/6J mouse feces. Our findings suggested that 3,5DHBA was the most promising polyphenol in decreasing phenol levels. Therefore, dietary intake of 3,5DHBA or its phenolic precursors may be useful in minimizing PBUT levels by targeting intestinal bacteria.
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Authors:
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3,5-Dihydroxybenzoic Acid as a Potent Inhibitor of Tyrosine Phenol-Lyase Decreases Fecal Phenol Levels in Mice.,Kobayashi T, Oishi S, Hara K, Matsui M, Mena P, Hashimoto H, Watanabe K, Miyoshi N J Med Chem. 2025 Apr 2. doi: 10.1021/acs.jmedchem.5c00418. PMID:40173106<ref>PMID:40173106</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 9j3u" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Morganella morganii subsp. morganii]]
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[[Category: Hara K]]
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[[Category: Hashimoto H]]
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[[Category: Kobayashi T]]
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[[Category: Miyoshi N]]
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[[Category: Ohishi S]]
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[[Category: Watanabe K]]

Current revision

Crystal structure of tyrosine phenol-lyase in complex with 3,5-dihydroxybenzoic acid

PDB ID 9j3u

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