9g7e

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Current revision (06:33, 19 March 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9g7e is ON HOLD until Paper Publication
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==Crystal structure of ASGPR with bound guanosine==
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<StructureSection load='9g7e' size='340' side='right'caption='[[9g7e]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9g7e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9G7E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9G7E FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.398&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GMP:GUANOSINE'>GMP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9g7e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9g7e OCA], [https://pdbe.org/9g7e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9g7e RCSB], [https://www.ebi.ac.uk/pdbsum/9g7e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9g7e ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ASGR1_HUMAN ASGR1_HUMAN] Mediates the endocytosis of plasma glycoproteins to which the terminal sialic acid residue on their complex carbohydrate moieties has been removed. The receptor recognizes terminal galactose and N-acetylgalactosamine units. After ligand binding to the receptor, the resulting complex is internalized and transported to a sorting organelle, where receptor and ligand are disassociated. The receptor then returns to the cell membrane surface.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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To increase the chemical space around the well-known GalNAc-ligand as ASGPR-binder, a high-throughput screening campaign was performed, testing approximately 550,000 compounds. After evaluation of the potential screening hits, only one compound, which showed high similarity with guanosine nucleosides, was chosen for further profiling. Crystal structure analysis revealed the coordination of the Ca(2+)-ion within the ASGPR-binding site by the cis-diol motif of the ribose unit as well as an additional pi-pi-interaction of the purine heterocycle to tryptophan-243. Based on these findings, guanosine was attached via the 5'-OH group to a recently described morpholino-based nucleotide using two different linker units. The resulting morpholino-guanosine building blocks were conjugated to the 5'-end of a literature-known transthyretin targeting small interfering RNA (siRNA), leading to trivalent siRNA-guanosine conjugates, which were tested for their TTR knockdown and exhibited similar potencies as the analogous GalNAc-conjugates in vitro and in vivo.
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Authors: Schreuder, H.A., Hofmeister, A.
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Trivalent siRNA-Conjugates with Guanosine as ASGPR-Binder Show Potent Knock-Down In Vivo.,Hofmeister A, Jahn-Hofmann K, Brunner B, Helms M, Metz-Weidmann C, Poeverlein C, Zech G, Li Z, Hessler G, Schreuder H, Elshorst B, Krack A, Kurz M, Heubel C, Scheidler S J Med Chem. 2025 Mar 7. doi: 10.1021/acs.jmedchem.4c02275. PMID:40052708<ref>PMID:40052708</ref>
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Description: Crystal structure of ASGPR with bound guanosine
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Schreuder, H.A]]
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<div class="pdbe-citations 9g7e" style="background-color:#fffaf0;"></div>
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[[Category: Hofmeister, A]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Hofmeister A]]
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[[Category: Schreuder HA]]

Current revision

Crystal structure of ASGPR with bound guanosine

PDB ID 9g7e

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