9k7r

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'''Unreleased structure'''
 
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The entry 9k7r is ON HOLD
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==Crystal structure of DNA/RNA duplex obtained using the counter diffusion method on Earth==
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<StructureSection load='9k7r' size='340' side='right'caption='[[9k7r]], [[Resolution|resolution]] 1.59&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9k7r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9K7R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9K7R FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.59&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5CM:5-METHYL-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>5CM</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9k7r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9k7r OCA], [https://pdbe.org/9k7r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9k7r RCSB], [https://www.ebi.ac.uk/pdbsum/9k7r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9k7r ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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For the success of structure-based drug design, three-dimensional structures solved by X-ray crystallography at atomic resolution are mandatory. In order to obtain high-quality single crystals with strong diffraction power, crystallization under microgravity conditions has been attempted for proteins. Since nucleic acid duplexes have chemical, structural and crystallographic characteristics that differ from those of globular proteins, such as intermolecular repulsion due to negative charge and molecular and crystallographic anisotropies, it is interesting to investigate whether microgravity crystallization improves the crystal growth of nucleic acids. However, to our knowledge there has been only one report on nucleic acid crystallization in a microgravity environment, and there have been no reports of successful structural analysis. Here, we conducted the crystallization of a DNA/RNA heteroduplex in space. The heteroduplex was successfully crystallized in a microgravity environment, and the size and appearance of the crystals were improved compared with control experiments conducted on Earth. Although the effect of the counter-diffusion method is likely to be more significant than the effect of microgravity in this study, we were able to analyze the structure at a higher resolution (1.4 A) than our previously reported crystal structure (1.9 A).
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Authors: Kondo, J., Ando, S.
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The first report of structural analysis of a nucleic acid using crystals grown in space.,Ando S, Takahashi M, Kondo J Acta Crystallogr F Struct Biol Commun. 2025 Mar 1. doi: , 10.1107/S2053230X25000810. PMID:39937045<ref>PMID:39937045</ref>
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Description: Crystal structure of DNA/RNA duplex obtained using the counter diffusion method on Earth
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Ando, S]]
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<div class="pdbe-citations 9k7r" style="background-color:#fffaf0;"></div>
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[[Category: Kondo, J]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Synthetic construct]]
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[[Category: Ando S]]
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[[Category: Kondo J]]

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Crystal structure of DNA/RNA duplex obtained using the counter diffusion method on Earth

PDB ID 9k7r

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