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Template:STRUCTURE 1tyf

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(New page: {{Structure |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1tyf, resolution 2.3&Aring; (<scene name='initialview01'>initial scene</scene>) |SITE= |LIGAND= |ACTIVITY= <span class='pl...)
Current revision (13:48, 5 June 2012) (edit) (undo)
 
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{{Structure
{{Structure
-
|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1tyf, resolution 2.3&Aring; (<scene name='initialview01'>initial scene</scene>)
+
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1tyf]], [[Resolution|resolution]] 2.30&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-
|SITE=
+
-
|LIGAND=
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Endopeptidase_Clp Endopeptidase Clp], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.92 3.4.21.92] </span>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Endopeptidase_Clp Endopeptidase Clp], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.92 3.4.21.92] </span>
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|GENE=
 
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK00277 clpP]</span>
 
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|RELATEDENTRY=
 
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tyf OCA], [http://www.ebi.ac.uk/pdbsum/1tyf PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1tyf RCSB]</span>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tyf OCA], [http://www.ebi.ac.uk/pdbsum/1tyf PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1tyf RCSB]</span>
 +
|FUNCTION={{GO|id=GO:0008462 | text = endopeptidase Clp activity}}{{GO|id=GO:0004252 | text = serine-type endopeptidase activity}}{{GO|id=GO:0008233 | text = peptidase activity}}{{GO|id=GO:0016787 | text = hydrolase activity}}
 +
|PROCESS={{GO|id=GO:0006950 | text = response to stress}}{{GO|id=GO:0006508 | text = proteolysis}}
 +
|COMPONENT={{GO|id=GO:0005737 | text = cytoplasm}}{{GO|id=GO:0005624 | text = membrane fraction}}
 +
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfA00 1Tyfa00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfB00 1Tyfb00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfC00 1Tyfc00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfD00 1Tyfd00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfE00 1Tyfe00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfF00 1Tyff00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfG00 1Tyfg00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfH00 1Tyfh00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfI00 1Tyfi00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfJ00 1Tyfj00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfK00 1Tyfk00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfL00 1Tyfl00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfM00 1Tyfm00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1tyfN00 1Tyfn00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001907 Ipr001907]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00574 PF00574]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30885 d1tyfa_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30886 d1tyfb_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30887 d1tyfc_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30888 d1tyfd_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30889 d1tyfe_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30890 d1tyff_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30891 d1tyfg_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30892 d1tyfh_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30893 d1tyfi_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30894 d1tyfj_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30895 d1tyfk_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30896 d1tyfl_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30897 d1tyfm_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=30898 d1tyfn_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P0A6G7 P0A6G7]</span>
 +
|uPDB=1TYF|CONSURF={{!}}-
 +
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
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{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
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{{!}} '''Toggle Conservation Colors:'''
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{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
 +
Rows = identical sequences:
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>A [x]</text>
 +
<name>jmb_1tyf_A</name>
 +
<title>toggle chain A</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>B [x]</text>
 +
<name>jmb_1tyf_B</name>
 +
<title>toggle chain B</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>C [x]</text>
 +
<name>jmb_1tyf_C</name>
 +
<title>toggle chain C</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>D [x]</text>
 +
<name>jmb_1tyf_D</name>
 +
<title>toggle chain D</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>E [x]</text>
 +
<name>jmb_1tyf_E</name>
 +
<title>toggle chain E</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>F [x]</text>
 +
<name>jmb_1tyf_F</name>
 +
<title>toggle chain F</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>G [x]</text>
 +
<name>jmb_1tyf_G</name>
 +
<title>toggle chain G</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>H [x]</text>
 +
<name>jmb_1tyf_H</name>
 +
<title>toggle chain H</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>I [x]</text>
 +
<name>jmb_1tyf_I</name>
 +
<title>toggle chain I</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>J [x]</text>
 +
<name>jmb_1tyf_J</name>
 +
<title>toggle chain J</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>K [x]</text>
 +
<name>jmb_1tyf_K</name>
 +
<title>toggle chain K</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>L [x]</text>
 +
<name>jmb_1tyf_L</name>
 +
<title>toggle chain L</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>M [x]</text>
 +
<name>jmb_1tyf_M</name>
 +
<title>toggle chain M</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>N [x]</text>
 +
<name>jmb_1tyf_N</name>
 +
<title>toggle chain N</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
}}
}}

Current revision

Drag the structure with the mouse to rotate
1tyf, resolution 2.30Å ()
Activity: Endopeptidase Clp, with EC number 3.4.21.92
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml


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