1ups

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (04:56, 17 October 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ups.gif|left|200px]]
 
-
<!--
+
==GlcNAc[alpha]1-4Gal releasing endo-[beta]-galactosidase from Clostridium perfringens==
-
The line below this paragraph, containing "STRUCTURE_1ups", creates the "Structure Box" on the page.
+
<StructureSection load='1ups' size='340' side='right'caption='[[1ups]], [[Resolution|resolution]] 1.82&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ups]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UPS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UPS FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.82&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
{{STRUCTURE_1ups| PDB=1ups | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ups FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ups OCA], [https://pdbe.org/1ups PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ups RCSB], [https://www.ebi.ac.uk/pdbsum/1ups PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ups ProSAT], [https://www.topsan.org/Proteins/SECSG/1ups TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q934G8_CLOPF Q934G8_CLOPF]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/up/1ups_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ups ConSurf].
 +
<div style="clear:both"></div>
-
'''GLCNAC[ALPHA]1-4GAL RELEASING ENDO-[BETA]-GALACTOSIDASE FROM CLOSTRIDIUM PERFRINGENS'''
+
==See Also==
-
 
+
*[[Galactosidase 3D structures|Galactosidase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1UPS is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UPS OCA].
+
-
 
+
-
==Reference==
+
-
Three-dimensional structure of GlcNAcalpha1-4Gal releasing endo-beta-galactosidase from Clostridium perfringens., Tempel W, Liu ZJ, Horanyi PS, Deng L, Lee D, Newton MG, Rose JP, Ashida H, Li SC, Li YT, Wang BC, Proteins. 2005 Apr 1;59(1):141-4. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15688452 15688452]
+
[[Category: Clostridium perfringens]]
[[Category: Clostridium perfringens]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Ashida, H.]]
+
[[Category: Ashida H]]
-
[[Category: Deng, L.]]
+
[[Category: Deng L]]
-
[[Category: Horanyi, P S.]]
+
[[Category: Horanyi PS]]
-
[[Category: Lee, D.]]
+
[[Category: Lee D]]
-
[[Category: Li, S C.]]
+
[[Category: Li S-C]]
-
[[Category: Li, Y T.]]
+
[[Category: Li Y-T]]
-
[[Category: Liu, Z J.]]
+
[[Category: Liu Z-J]]
-
[[Category: Newton, M G.]]
+
[[Category: Newton MG]]
-
[[Category: Rose, J P.]]
+
[[Category: Rose JP]]
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
[[Category: Tempel W]]
-
[[Category: Tempel, W.]]
+
[[Category: Wang B-C]]
-
[[Category: Wang, B C.]]
+
-
[[Category: Endo-galactosidase,clostridium perfringens,glycosyl hydrolase,psi,protein structure initiative,southeast collaboratory for structural genomics,secsg]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 11:32:44 2008''
+

Current revision

GlcNAc[alpha]1-4Gal releasing endo-[beta]-galactosidase from Clostridium perfringens

PDB ID 1ups

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ups"
Personal tools