9f2y

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Current revision (10:32, 12 March 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 9f2y is ON HOLD
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==Focused refinement of SV2B-LD-BoNT/A1 at pH 5.5==
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<StructureSection load='9f2y' size='340' side='right'caption='[[9f2y]], [[Resolution|resolution]] 4.39&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[9f2y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_botulinum Clostridium botulinum] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9F2Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9F2Y FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.39&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9f2y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9f2y OCA], [https://pdbe.org/9f2y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9f2y RCSB], [https://www.ebi.ac.uk/pdbsum/9f2y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9f2y ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SV2B_HUMAN SV2B_HUMAN] Probably plays a role in the control of regulated secretion in neural and endocrine cells. (Microbial infection) Receptor for the C.botulinum neurotoxin type A2 (BoNT/A, botA); glycosylation is not essential but enhances the interaction (PubMed:29649119). Probably also serves as a receptor for the closely related C.botulinum neurotoxin type A1.<ref>PMID:29649119</ref> <ref>PMID:29649119</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Botulinum neurotoxin A1 (BoNT/A1) belongs to the most potent toxins and is used as a major therapeutic agent. Neurotoxin conformation is crucial for its translocation to the neuronal cytosol, a key process for intoxication that is only poorly understood. To gain molecular insights into the steps preceding toxin translocation, we determine cryo-EM structures of BoNT/A1 alone and in complex with its receptor synaptic vesicle glycoprotein 2B (SV2B). In solution, BoNT/A1 adopts a unique, semi-closed conformation. The toxin changes its structure into an open state upon receptor binding with the translocation domain (H(N)) and the catalytic domain (LC) remote from the membrane, suggesting translocation incompatibility. Under acidic pH conditions, where translocation is initiated, receptor-bound BoNT/A1 switches back into a semi-closed conformation. This conformation brings the LC and H(N) close to the membrane, suggesting that a translocation-competent state of the toxin is required for successful LC transport into the neuronal cytosol.
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Authors:
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Cryo-EM structure of the botulinum neurotoxin A/SV2B complex and its implications for translocation.,Khanppnavar B, Leka O, Pal SK, Korkhov VM, Kammerer RA Nat Commun. 2025 Feb 11;16(1):1224. doi: 10.1038/s41467-025-56304-z. PMID:39934119<ref>PMID:39934119</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 9f2y" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Clostridium botulinum]]
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Kammerer R]]
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[[Category: Khanppnavar B]]
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[[Category: Korkhov V]]
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[[Category: Leka O]]

Current revision

Focused refinement of SV2B-LD-BoNT/A1 at pH 5.5

PDB ID 9f2y

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