1ydp

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(New page: 200px<br /> <applet load="1ydp" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ydp, resolution 1.9&Aring;" /> '''1.9A crystal structu...)
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[[Image:1ydp.gif|left|200px]]<br />
 
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<applet load="1ydp" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1ydp, resolution 1.9&Aring;" />
 
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'''1.9A crystal structure of HLA-G'''<br />
 
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==Overview==
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==1.9A crystal structure of HLA-G==
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HLA-G is a nonclassical major histocompatibility complex class I (MHC-I), molecule that is primarily expressed at the fetal-maternal interface, where it is thought to play a role in protecting the fetus from the, maternal immune response. HLA-G binds a limited repertoire of peptides and, interacts with the inhibitory leukocyte Ig-like receptors LIR-1 and LIR-2, and possibly with certain natural killer cell receptors. To gain further, insights into HLA-G function, we determined the 1.9-A structure of a, monomeric HLA-G complexed to a natural endogenous peptide ligand from, histone H2A (RIIPRHLQL). An extensive network of contacts between the, peptide and the antigen-binding cleft reveal a constrained mode of binding, reminiscent of the nonclassical HLA-E molecule, thereby providing a, structural basis for the limited peptide repertoire of HLA-G. The alpha3, domain of HLA-G, a candidate binding site for the LIR-1 and -2 inhibitory, receptors, is structurally distinct from the alpha3 domains of classical, MHC-I molecules, providing a rationale for the observed affinity, differences for these ligands. The structural data suggest a head-to-tail, mode of dimerization, mediated by an intermolecular disulfide bond, that, is consistent with the observation of HLA-G dimers on the cell surface.
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<StructureSection load='1ydp' size='340' side='right'caption='[[1ydp]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1ydp]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YDP FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ydp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ydp OCA], [https://pdbe.org/1ydp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ydp RCSB], [https://www.ebi.ac.uk/pdbsum/1ydp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ydp ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/HLAG_HUMAN HLAG_HUMAN] Involved in the presentation of foreign antigens to the immune system. Plays a role in maternal tolerance of the fetus by mediating protection from the deleterious effects of natural killer cells, cytotoxic T-lymphocytes, macrophages and mononuclear cells.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yd/1ydp_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ydp ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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HLA-G is a nonclassical major histocompatibility complex class I (MHC-I) molecule that is primarily expressed at the fetal-maternal interface, where it is thought to play a role in protecting the fetus from the maternal immune response. HLA-G binds a limited repertoire of peptides and interacts with the inhibitory leukocyte Ig-like receptors LIR-1 and LIR-2 and possibly with certain natural killer cell receptors. To gain further insights into HLA-G function, we determined the 1.9-A structure of a monomeric HLA-G complexed to a natural endogenous peptide ligand from histone H2A (RIIPRHLQL). An extensive network of contacts between the peptide and the antigen-binding cleft reveal a constrained mode of binding reminiscent of the nonclassical HLA-E molecule, thereby providing a structural basis for the limited peptide repertoire of HLA-G. The alpha3 domain of HLA-G, a candidate binding site for the LIR-1 and -2 inhibitory receptors, is structurally distinct from the alpha3 domains of classical MHC-I molecules, providing a rationale for the observed affinity differences for these ligands. The structural data suggest a head-to-tail mode of dimerization, mediated by an intermolecular disulfide bond, that is consistent with the observation of HLA-G dimers on the cell surface.
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==Disease==
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Crystal structure of HLA-G: a nonclassical MHC class I molecule expressed at the fetal-maternal interface.,Clements CS, Kjer-Nielsen L, Kostenko L, Hoare HL, Dunstone MA, Moses E, Freed K, Brooks AG, Rossjohn J, McCluskey J Proc Natl Acad Sci U S A. 2005 Mar 1;102(9):3360-5. Epub 2005 Feb 17. PMID:15718280<ref>PMID:15718280</ref>
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Known diseases associated with this structure: Asthma, susceptibility to OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=142871 142871]], Hypoproteinemia, hypercatabolic OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=109700 109700]]
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==About this Structure==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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1YDP is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with CO and CL as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1YDP OCA].
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</div>
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<div class="pdbe-citations 1ydp" style="background-color:#fffaf0;"></div>
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==Reference==
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==See Also==
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Crystal structure of HLA-G: a nonclassical MHC class I molecule expressed at the fetal-maternal interface., Clements CS, Kjer-Nielsen L, Kostenko L, Hoare HL, Dunstone MA, Moses E, Freed K, Brooks AG, Rossjohn J, McCluskey J, Proc Natl Acad Sci U S A. 2005 Mar 1;102(9):3360-5. Epub 2005 Feb 17. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15718280 15718280]
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*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
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*[[MHC 3D structures|MHC 3D structures]]
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*[[MHC I 3D structures|MHC I 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Protein complex]]
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[[Category: Large Structures]]
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[[Category: Brooks, A.G.]]
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[[Category: Synthetic construct]]
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[[Category: Clements, C.S.]]
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[[Category: Brooks AG]]
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[[Category: Dunstone, M.A.]]
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[[Category: Clements CS]]
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[[Category: Freed, K.]]
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[[Category: Dunstone MA]]
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[[Category: Hoare, H.L.]]
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[[Category: Freed K]]
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[[Category: Kjer-nielsen, L.]]
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[[Category: Hoare HL]]
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[[Category: Kostenko, L.]]
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[[Category: Kjer-nielsen L]]
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[[Category: Mccluskey, J.]]
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[[Category: Kostenko L]]
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[[Category: Moses, E.]]
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[[Category: Mccluskey J]]
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[[Category: Rossjohn, J.]]
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[[Category: Moses E]]
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[[Category: CL]]
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[[Category: Rossjohn J]]
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[[Category: CO]]
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[[Category: immune system]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 20:18:38 2007''
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Current revision

1.9A crystal structure of HLA-G

PDB ID 1ydp

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